View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11115_low_8 (Length: 320)
Name: NF11115_low_8
Description: NF11115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11115_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 17108227 - 17107923
Alignment:
| Q |
1 |
aagatttcttactgtatccggcaactccaccatatccatgtatccgcacaatgacaatacacgcaacaacttacacttcaagaacaactttggaagctcc |
100 |
Q |
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| T |
17108227 |
aagatttcttactgtatccggcaactccaccatatccatgtatccgcacaatgacaatacacgcaacaacttacatttcaagaacaactttggaagctcc |
17108128 |
T |
|
| Q |
101 |
aatgacgtcaagggcgacaaccaaagatgttggtaagaattcatagacagtggtataaatgtccacaacttattatctgtatataaggtctcgaaccctt |
200 |
Q |
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| T |
17108127 |
aatgacgtcaagggcgacaaccaacgatgttggtaagaattcatagacagtggtataaatgtccacaacttattatctgtatataaggtctcgaaccctt |
17108028 |
T |
|
| Q |
201 |
ttgaagatccaattttatcacataaaaatgaaaaatgacgagttatccctgatatatttttccctctttcggctcccaatgttaagcaaaaatccccaaa |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17108027 |
ttgaagatccaattttatcacatacaaatgaaaaatgacgagttatccctgatatatttttccctctttcggctcccaatgttaagcaaaaatccccaaa |
17107928 |
T |
|
| Q |
301 |
cacag |
305 |
Q |
| |
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||||| |
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| T |
17107927 |
cacag |
17107923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 17028560 - 17028519
Alignment:
| Q |
205 |
agatccaattttatcacataaaaatgaaaaatgacgagttat |
246 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| |
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| T |
17028560 |
agatcctatttcatcacataaaaatgaaaaatgacgagttat |
17028519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 17046898 - 17046857
Alignment:
| Q |
205 |
agatccaattttatcacataaaaatgaaaaatgacgagttat |
246 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| |
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| T |
17046898 |
agatcctatttcatcacataaaaatgaaaaatgacgagttat |
17046857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 17094391 - 17094350
Alignment:
| Q |
205 |
agatccaattttatcacataaaaatgaaaaatgacgagttat |
246 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| |
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| T |
17094391 |
agatcctatttcatcacataaaaatgaaaaatgacgagttat |
17094350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 16976676 - 16976647
Alignment:
| Q |
217 |
atcacataaaaatgaaaaatgacgagttat |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16976676 |
atcacataaaaatgaaaaatgacgagttat |
16976647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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