View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11116_high_1 (Length: 624)

Name: NF11116_high_1
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11116_high_1
NF11116_high_1
[»] chr5 (1 HSPs)
chr5 (25-613)||(39252447-39253025)
[»] chr1 (4 HSPs)
chr1 (22-157)||(15837953-15838088)
chr1 (417-470)||(35201495-35201548)
chr1 (417-470)||(35202375-35202428)
chr1 (417-465)||(37643843-37643891)
[»] chr4 (8 HSPs)
chr4 (21-134)||(2367689-2367802)
chr4 (30-126)||(2519175-2519271)
chr4 (25-134)||(2472029-2472138)
chr4 (28-136)||(12124764-12124872)
chr4 (21-79)||(2477501-2477559)
chr4 (45-126)||(2486264-2486345)
chr4 (34-126)||(2491074-2491166)
chr4 (57-136)||(12126849-12126928)
[»] chr3 (2 HSPs)
chr3 (414-468)||(47007765-47007819)
chr3 (417-468)||(47007023-47007074)
[»] chr2 (4 HSPs)
chr2 (415-459)||(29308399-29308443)
chr2 (415-459)||(29309102-29309146)
chr2 (415-470)||(4161336-4161390)
chr2 (415-459)||(29283910-29283954)
[»] chr8 (2 HSPs)
chr8 (417-470)||(33520893-33520946)
chr8 (417-459)||(33520216-33520258)
[»] chr6 (1 HSPs)
chr6 (415-470)||(4275070-4275125)
[»] scaffold0143 (1 HSPs)
scaffold0143 (417-459)||(1625-1667)


Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 25 - 613
Target Start/End: Complemental strand, 39253025 - 39252447
Alignment:
Q  25 gtgaggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaact 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39253025 gtgaggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaact 39252926  T
Q  125 gtatggagacaaaagagacggacttcaaagtgtgattgtctgcgttgtggaatttcaagatgcattcctataactcctctggtaaactctggtaaatatg 224  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39252925 gtatggagacgaaagagacggacttcaaagtgtgattgtctgcgttgtggaatttcaagatgcattcccataactcctctggtaaactctggtaaatatg 39252826  T
Q  225 aacatgcttctgccatcattcttgtttgaaaattcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttct 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252825 aacatgcttctgccatcattcttgtttgaaaattcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttct 39252726  T
Q  325 ctcaattcattcactcactttcattatatagacgcccctaaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagat 424  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252725 ctcaattcattcactcactttcattata----------taaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagat 39252636  T
Q  425 cctctccatttagggaggaaatggccatctcaattacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctct 524  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252635 cctctccattttgggaggaaatggccatctcaattacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctct 39252536  T
Q  525 aataataatactccctcataatctgactttcacgtgatgagcactcgtctattgctgttaatacatttgcaacactggccttgttctct 613  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39252535 aatagtaatactccctcataatctgactttcacgtgatgagcactcgtctattgctgttaatacatttgcaacactggccttattctct 39252447  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 15838088 - 15837953
Alignment:
Q  22 gatgtgaggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaa 121  Q
    ||||| ||||| ||||||||||  |||||   ||||| | ||||||||||||||||  |||||  ||||||| |||||||||||||| ||||||||||||    
T  15838088 gatgttaggttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaa 15837989  T
Q  122 actgtatggagacaaaagagacggacttcaaagtgt 157  Q
    ||||| ||||||| |  |||| |||||| |||||||    
T  15837988 actgtttggagaccatcgagagggacttgaaagtgt 15837953  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 470
Target Start/End: Original strand, 35201495 - 35201548
Alignment:
Q  417 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 470  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  35201495 gtgcagatcctctccatttggggagtaaatggccatctcaatttcctttcataa 35201548  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 470
Target Start/End: Complemental strand, 35202428 - 35202375
Alignment:
Q  417 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 470  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  35202428 gtgcagatcctctccatttggtgaggaaatggccatctcaatttcctttcataa 35202375  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 37643891 - 37643843
Alignment:
Q  417 gtgcagatcctctccatttagggaggaaatggccatctcaattaccttt 465  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||| |||||    
T  37643891 gtgcatatcctctccatttagggagaaaatgacaatctcaatttccttt 37643843  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 2367802 - 2367689
Alignment:
Q  21 ggatgtgaggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagaga 120  Q
    |||||||||||||||||||||||  || ||  ||  |||| |||||||||||| |||||  ||||| | |||| |||||||||||||| |||||||||||    
T  2367802 ggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggagaga 2367703  T
Q  121 aactgtatggagac 134  Q
    || ||| |||||||    
T  2367702 aattgtttggagac 2367689  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 2519175 - 2519271
Alignment:
Q  30 gttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaactgt 126  Q
    |||||||||||| ||||||||| || ||||| |||||||||||||||| | ||||| ||  |||||||| | ||||||| ||||||| |||||||||    
T  2519175 gttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttggtgatggacagaaactgt 2519271  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 2472029 - 2472138
Alignment:
Q  25 gtgaggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaact 124  Q
    |||||||| ||||||||||| |||||  || ||||| |||||||||||| |  |  ||||| ||||||| ||| |||||| ||| ||||||||| |||||    
T  2472029 gtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaact 2472128  T
Q  125 gtatggagac 134  Q
    || |||||||    
T  2472129 gtttggagac 2472138  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 12124764 - 12124872
Alignment:
Q  28 aggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaactgta 127  Q
    ||||||||||||||||  |||||  |   |||| |||||||||||| ||| | |||||||| |||  || ||||||||||| ||||||||||||| |||     
T  12124764 aggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtt 12124863  T
Q  128 tggagacaa 136  Q
    |||||||||    
T  12124864 tggagacaa 12124872  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 2477501 - 2477559
Alignment:
Q  21 ggatgtgaggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcgg 79  Q
    |||||||| ||| |||||||||| ||||||| || ||||||||||||| ||||||||||    
T  2477501 ggatgtgacgttagggaacctttgaaagagaggatgaagggaagggatggtttgatcgg 2477559  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 2486264 - 2486345
Alignment:
Q  45 aaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaactgt 126  Q
    ||||||| || ||||| ||||||||||||  |||| ||||| ||  ||| |||||||||||||| ||||||| |||||||||    
T  2486264 aaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgt 2486345  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 2491074 - 2491166
Alignment:
Q  34 gggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaactgt 126  Q
    |||||||||||||||||| ||  |||| |||||||||||  ||||| ||||| ||  ||  |||||||||||||  ||||||| |||||||||    
T  2491074 gggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgt 2491166  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 12126849 - 12126928
Alignment:
Q  57 aagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaactgtatggagacaa 136  Q
    |||| |||||||| ||| ||| | || ||||| |||| || ||||||||||| ||||||||||||| ||| |||||||||    
T  12126849 aaggaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttggagacaa 12126928  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 47007819 - 47007765
Alignment:
Q  414 tgagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 468  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007819 tgagtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007765  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 468
Target Start/End: Original strand, 47007023 - 47007074
Alignment:
Q  417 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 468  Q
    |||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007023 gtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007074  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 459
Target Start/End: Complemental strand, 29308443 - 29308399
Alignment:
Q  415 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 459  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29308443 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29308399  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 29309102 - 29309146
Alignment:
Q  415 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 459  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29309102 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29309146  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 470
Target Start/End: Complemental strand, 4161390 - 4161336
Alignment:
Q  415 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 470  Q
    ||||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||    
T  4161390 gagtgcagatcctctccatttgggga-gaaattgcaatctcaatttcctttcataa 4161336  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 459
Target Start/End: Complemental strand, 29283954 - 29283910
Alignment:
Q  415 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 459  Q
    ||||| |||||||||||||||||||||||||| || |||| ||||    
T  29283954 gagtgtagatcctctccatttagggaggaaattgcaatctaaatt 29283910  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 470
Target Start/End: Complemental strand, 33520946 - 33520893
Alignment:
Q  417 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 470  Q
    ||||||||||||||||||| | ||||||||||||||| ||||| ||||| ||||    
T  33520946 gtgcagatcctctccatttggtgaggaaatggccatcacaatttcctttaataa 33520893  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 33520216 - 33520258
Alignment:
Q  417 gtgcagatcctctccatttagggaggaaatggccatctcaatt 459  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  33520216 gtgcagatcctctccattttatgaggaaatggccatctcaatt 33520258  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 470
Target Start/End: Original strand, 4275070 - 4275125
Alignment:
Q  415 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 470  Q
    |||| ||||||||||||||||||| || ||||||| ||||||||| || |||||||    
T  4275070 gagtacagatcctctccatttaggtagaaaatggcaatctcaatttccattcataa 4275125  T

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Target: scaffold0143 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 1625 - 1667
Alignment:
Q  417 gtgcagatcctctccatttagggaggaaatggccatctcaatt 459  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  1625 gtgcagatcctctccattttatgaggaaatggccatctcaatt 1667  T

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