View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_high_10 (Length: 250)
Name: NF11116_high_10
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6095569 - 6095333
Alignment:
| Q |
1 |
ttgggaaaagaatggtgtctactctgtgagatcggcacatcatgcaatgtgtgaagatagaaactcggagcaggctgaatcctcaaatagcaacaattct |
100 |
Q |
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| T |
6095569 |
ttgggaaaagaatggtgtctactctgtgagatcggcgcatcatgcaatgtgtgaggatagaaactcggagcaggctgaatcctcaaatagcaacaattct |
6095470 |
T |
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| Q |
101 |
gagatatggaagcgtatttggagtattcccgtccctaaaagtgcacaaaatttcttatggaggttggcaaaaaatatccttccaactagaagtaatttgg |
200 |
Q |
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| T |
6095469 |
gagatatggaagcgtatttggagtactcccgtccctaaaagtgcacaaaatttcttatggaggttgacaaaaaatatccttccaactagaagtaatttgg |
6095370 |
T |
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| Q |
201 |
gtaagaaaggtatatccctggatatgagttgtcctct |
237 |
Q |
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| T |
6095369 |
gtaagaaaggtatatccctggatatgagttgtcctct |
6095333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 32805348 - 32805584
Alignment:
| Q |
1 |
ttgggaaaagaatggtgtctactctgtgagatcggcacatcatgcaatgtgtgaagatagaaactcggagcaggctgaatcctcaaatagcaacaattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32805348 |
ttgggaaaagaatggtgtctactctgtgagatcggcgcatcatgcaatgtgtgaggatagaaactcagagcaggctgaatcctcaaatagcaacaattct |
32805447 |
T |
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| Q |
101 |
gagatatggaagcgtatttggagtattcccgtccctaaaagtgcacaaaatttcttatggaggttggcaaaaaatatccttccaactagaagtaatttgg |
200 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805448 |
gagatttggaagcgtatttggagcattcccgtccctaaaagtgcacaaaatttcttatggaggttggcaaaaaatatccttccaactagaagtaatttgg |
32805547 |
T |
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| Q |
201 |
gtaagaaaggtatatccctggatatgagttgtcctct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32805548 |
gtaagaaaggtatatccctggatatgagttgtcctct |
32805584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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