View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_high_13 (Length: 239)
Name: NF11116_high_13
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32805266 - 32805045
Alignment:
| Q |
1 |
ctaaaaataagaccccggtcccactgatttgtatccctatcaattaattccgcaacagtagcatcaccattgagacctcctcccggattgttgagaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32805266 |
ctaaaaataagaccccggtcccactgatttgtatccctatcaattaattctgcaacagtagcatcaccactgagacctcctcccggattgttgagaagaa |
32805167 |
T |
|
| Q |
101 |
aaccattggaacaagggatccacctatctttgaagatgcggacaagactcccatcccctatttcccatcttgcaccagtttcaataaccccttttgcaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32805166 |
aaccattggaacaagggatccacctatctttgaagatgcggacaagactcccatcccctatttcccatcttgcaccagtttcaataacctcttttgcaga |
32805067 |
T |
|
| Q |
201 |
caacagacttctccaagcatag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
32805066 |
caacagacttctccaagcatag |
32805045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6095651 - 6095872
Alignment:
| Q |
1 |
ctaaaaataagaccccggtcccactgatttgtatccctatcaattaattccgcaacagtagcatcaccattgagacctcctcccggattgttgagaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
6095651 |
ctaaaaataagaccccggtcccactgatttgtatccctatcaattaattccgcaatagtagcatcaccactaagacctcctcccggattgttgagaagaa |
6095750 |
T |
|
| Q |
101 |
aaccattggaacaagggatccacctatctttgaagatgcggacaagactcccatcccctatttcccatcttgcaccagtttcaataaccccttttgcaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6095751 |
aaccattggaacaagggatccacctatctttgaagatgcggacaagactcccatcccctatttcccatcttgcactagtttcaataaccccttttgcaga |
6095850 |
T |
|
| Q |
201 |
caacagacttctccaagcatag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6095851 |
caacagacttctccaagcatag |
6095872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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