View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_high_15 (Length: 211)
Name: NF11116_high_15
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1711185 - 1711245
Alignment:
| Q |
15 |
cacagacatcccaactaggttggtatctttgaggaacttttatcctctgccgccaacctca |
75 |
Q |
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| T |
1711185 |
cacagacatcctaactaggttggcatctttgaggaacttttatcctctgccgccaacctca |
1711245 |
T |
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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 1711291 - 1711333
Alignment:
| Q |
121 |
gggggagactaggtctgaccctcaaagcaaaagaaaagaaaac |
163 |
Q |
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| T |
1711291 |
gggggagactaggtctgaccctcaaagcaaaagaaaagaaaac |
1711333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 19424933 - 19424966
Alignment:
| Q |
129 |
ctaggtctgaccctcaaagcaaaagaaaagaaaa |
162 |
Q |
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| T |
19424933 |
ctaggtgtgaccctcaaagcaaaagaaaagaaaa |
19424966 |
T |
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