View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_high_9 (Length: 267)
Name: NF11116_high_9
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 3543385 - 3543130
Alignment:
| Q |
12 |
gaagggtaatgagtaaaagattatagatggatgatgctggaattatcctgtttgaaaattgacaattccacacacagattctggtaatcagatgaaaaat |
111 |
Q |
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| T |
3543385 |
gaagggtaatgagtaaaagattatagctggatgatgctggaattatcctgtttgaaaattgacaattccacacacagattctggtaatcagatgaaaaat |
3543286 |
T |
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| Q |
112 |
cattcaattgatattttacctggttggcaccatgtgcacttgatatgttttcatcaagaagggtcaacaatgatcgattaatctcgttgcgttcaaccaa |
211 |
Q |
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| T |
3543285 |
cattcaattgatattttacctggttggcaccatgtgcacttgatatgttttcatcaagaagggtcaacaatgatcgattaatctcgttgcgttcaaccaa |
3543186 |
T |
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| Q |
212 |
ctccagcaactgtattgaagataaattagacatagtttcactagaacagaagtaca |
267 |
Q |
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| T |
3543185 |
ctccagcaactgtattgaagataaattagacctagtttaactagaacagaagtaca |
3543130 |
T |
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