View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_low_12 (Length: 244)
Name: NF11116_low_12
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 754216 - 754418
Alignment:
| Q |
26 |
caaatattgaattaagctcatatatatatttacacaacttctaagtagaacatataagttattaataaagctaaagcaatgatgttaggcatcttaatac |
125 |
Q |
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| T |
754216 |
caaatattaaattaagctcgtatatatatttatagaacttctaagtagaacatataagttattaataaagctaaagcaatgatgttaggcatcttaatac |
754315 |
T |
|
| Q |
126 |
tattttattattccttatcgcattgttaatttatggaatatttgaattggtttacaaattaaaggggttcttccaaagatttatctttaaataagtgcta |
225 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
754316 |
tattttattattctttatcgcattgttaatttatggaatatttgaattggtttacaaattaaaggggttcttccaaagatttatctttaaataagtgcta |
754415 |
T |
|
| Q |
226 |
act |
228 |
Q |
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| T |
754416 |
act |
754418 |
T |
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