View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_low_2 (Length: 577)
Name: NF11116_low_2
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 20 - 530
Target Start/End: Original strand, 7838483 - 7838993
Alignment:
| Q |
20 |
tgagactcccacttgatgctcataacgattgccctcctcttaaactaccaacttctgaatgaatgttattgtgcagaatacaactcaaaattagttgtct |
119 |
Q |
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| T |
7838483 |
tgagactcccacttgatgctcataacgattgccctcctcttaaactaccaacttctgaatgaatgttattgtgcagaatacaactcaaaattagttgtct |
7838582 |
T |
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| Q |
120 |
actgcgattacagctcaaaattcccacattactcttcgccgccgtttgactactattaattttggattacttcccatctcttgagtgtgcattttgtaac |
219 |
Q |
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| T |
7838583 |
attgcggttacagctcaaaattcccacattactcttcgctgccgtttgactactattaattttggattacttcccatctcttgagtgtgcattttgtaac |
7838682 |
T |
|
| Q |
220 |
accagcaaaatcccctccattaattccgcagttgacctttttaaaaatattatttgtctgcaatttgcatgatgtggtcgagnnnnnnnnggtagggcta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7838683 |
accagcaaaatcccctccattaattccgcagttgacctttttagaaatattatttgtctgcaatttgcatgatgtggtcgagtgttttttggtagggcta |
7838782 |
T |
|
| Q |
320 |
gagaaagattgaacagttggcgatttggtaattgttttttggatactttttaaatcgattgattaaaaaatactcaaaggacaattaactaccgtttaac |
419 |
Q |
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| T |
7838783 |
gagaaagattgaacagttggcgatttggtaattgtttttcggatactttttaaatcgattgattaaaaaatactcaaatgacaattaactaccgtttaac |
7838882 |
T |
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| Q |
420 |
atgttttaggtatttatgagcatttgttaagtgtttatattgaacaatcttcttacatttgctttagtgtatggccttttgctacctatgagtttttttg |
519 |
Q |
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| T |
7838883 |
atgttttaggtatttatgagcatttcttaagtgtttatattgaacaatcttcttacatttgctcaagtgtatggccttttgctacctatgagtttttttt |
7838982 |
T |
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| Q |
520 |
ggggcaattag |
530 |
Q |
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||||||||||| |
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| T |
7838983 |
ggggcaattag |
7838993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 109 - 530
Target Start/End: Original strand, 7844568 - 7844992
Alignment:
| Q |
109 |
attagttgtctactgcgattacagctcaaaattcccacattactcttcgccgccgtttgactactattaattttggattacttcccatctcttgagtgtg |
208 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7844568 |
attagttgtctgctgcgattacagctcaaaattcccacattactcttcgcctcagtttgactactattaattttggattacttcccatctcttgagtgtg |
7844667 |
T |
|
| Q |
209 |
cattttgtaacaccagcaaaatcccctccattaattccgcagttgacctttttaaaaatattatttgtctgcaatttgcatgatgtggtcgagnnnnnnn |
308 |
Q |
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| T |
7844668 |
cattttgtaacaccagcaaaatcccttccattaattccgcagttgacctttttagaaatattatttgtctgcaatttgcatgatgtggtcgagtgttttt |
7844767 |
T |
|
| Q |
309 |
nggtagggctagagaaagattgaacagt---tggcgatttggtaattgttttttggatactttttaaatcgattgattaaaaaatactcaaaggacaatt |
405 |
Q |
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| T |
7844768 |
tggtagggttagaaaaagattgaacagcgcctggcgatttggtaattgtttttcggatactttttaaatcgattgattaaaaaatactcaaatgacaatt |
7844867 |
T |
|
| Q |
406 |
aactaccgtttaacatgttttaggtatttatgagcatttgttaagtgtttatattgaacaatcttcttacatttgctttagtgtatggccttttgctacc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7844868 |
aactaccgtttaacatgttttaggtatttatgagcatttgttaagtgtttatattgaacaatcttcttacatttgcttaagtgtatggccttttgctacc |
7844967 |
T |
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| Q |
506 |
tatgagtttttttgggggcaattag |
530 |
Q |
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||||| ||||||| ||||||||||| |
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| T |
7844968 |
tatgaattttttttggggcaattag |
7844992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 3649410 - 3649483
Alignment:
| Q |
20 |
tgagactcccacttgatgctcataacgattgccctcctcttaaactaccaacttctgaatgaatgttattgtgc |
93 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3649410 |
tgaggctcccacttgatgctcataacgattgccctcctcttaaactaccaacttctgaatgaatgttattgtgc |
3649483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 43218023 - 43217979
Alignment:
| Q |
384 |
aaaaaatactcaaaggacaattaactaccgtttaacatgttttag |
428 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
43218023 |
aaaaaatactcaaatgacaattaactaccgttcaacatgttttag |
43217979 |
T |
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