View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_low_3 (Length: 484)
Name: NF11116_low_3
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 32942869 - 32942642
Alignment:
| Q |
18 |
agttcattgcaagaacttggattttcttcttcttccgagcttttgttacctaattctgttaaaggacttaaagcacttttatctgttgctgcttataaaa |
117 |
Q |
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| T |
32942869 |
agttcattgcaagaacttggattttcttcttcttctgagcttttgttacctaattctgttaaaggacttaaagcacttttatctgttgctgcttataaaa |
32942770 |
T |
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| Q |
118 |
aactttggttcccggatcgtttacacaaagactttcttgaggtatgtatgtaaccctagttttcttcagtaaaatcttttgattaaacaaatgaaatttg |
217 |
Q |
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| T |
32942769 |
aactttggttcccggatcgtttacacaaagactttcttgaggtatgtatgtaaccctagttttcttcagtaaaatcttttgattaaacaaatgaaatttg |
32942670 |
T |
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| Q |
218 |
agaaaatatagctagctgttgtattgtagtaa |
249 |
Q |
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| T |
32942669 |
agaaaatat----agctgttgtattgtagtaa |
32942642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 247 - 474
Target Start/End: Complemental strand, 32942550 - 32942330
Alignment:
| Q |
247 |
taaaatggtgttatgataaaagtatgtatagttggaaaacagcacacagtttttagactcctaacaccaaatacccccatccctcaaaataggttcaaac |
346 |
Q |
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| T |
32942550 |
taaaatggtgttatgataaaagtat----agttggaaaacagcacacagtttttagactcctaacaccaaatacccccatccctcaaaataggttcaaac |
32942455 |
T |
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| Q |
347 |
tcagtagcactattcatgagcacatatgttacactgcggtggaataaaaaactacaatttattgtaggttgtctcccaacaaacacgacttattattttt |
446 |
Q |
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| T |
32942454 |
tcagtagcactattcatgagcacatatgttacactgcggtggaagaaaaaactacaatttattgtaggttgtctcc---caaacacgacttattattttt |
32942358 |
T |
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| Q |
447 |
gtacccatcactttattaatttcttcat |
474 |
Q |
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| T |
32942357 |
gtacccatcactttattaatttcttcat |
32942330 |
T |
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