View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_low_4 (Length: 376)
Name: NF11116_low_4
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 7089827 - 7090031
Alignment:
| Q |
22 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
121 |
Q |
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| T |
7089827 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
7089926 |
T |
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| Q |
122 |
acaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattga |
221 |
Q |
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| T |
7089927 |
acaagctacaagtgcacggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattga |
7090026 |
T |
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| Q |
222 |
ctctg |
226 |
Q |
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||||| |
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| T |
7090027 |
ctctg |
7090031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 7669653 - 7669857
Alignment:
| Q |
22 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
121 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7669653 |
ttacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggc |
7669752 |
T |
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| Q |
122 |
acaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattga |
221 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
7669753 |
acaagctacaagtgcgcggagagatggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaagttagcccattga |
7669852 |
T |
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| Q |
222 |
ctctg |
226 |
Q |
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||||| |
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| T |
7669853 |
ctctg |
7669857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 259 - 376
Target Start/End: Original strand, 7090070 - 7090187
Alignment:
| Q |
259 |
gtgttgttggtactgatagtgaaattggtgaagagcattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
358 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7090070 |
gtgttgttggtactgatagtgatattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
7090169 |
T |
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| Q |
359 |
catgttgccaattccctc |
376 |
Q |
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|||||||||||||||||| |
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| T |
7090170 |
catgttgccaattccctc |
7090187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 259 - 376
Target Start/End: Original strand, 7669888 - 7670005
Alignment:
| Q |
259 |
gtgttgttggtactgatagtgaaattggtgaagagcattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
358 |
Q |
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||||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||| |||| |
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| T |
7669888 |
gtgttgttggtgctgatagtgatattggtgaggaacattctggtgctatgtgagattttccatgtctatgtgtatgtttggtttctacatctcttatata |
7669987 |
T |
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| Q |
359 |
catgttgccaattccctc |
376 |
Q |
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|||||||||||||||||| |
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| T |
7669988 |
catgttgccaattccctc |
7670005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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