View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_low_5 (Length: 358)
Name: NF11116_low_5
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 3542673 - 3543004
Alignment:
| Q |
19 |
gtaactatgtccttgaaattaacaaaatttcacaatgatctccggatttgaaaattctcaatcacattagtcatgttcagactatttcatggtctaaatt |
118 |
Q |
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| T |
3542673 |
gtaactatgtccttgaaattaacaaaatttcacaatgatctccggatttgaaaattctcaatcacattagtcatgttcagactatttcatggtctaaatt |
3542772 |
T |
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| Q |
119 |
gaccgagttggaaagaatcatgattagtgattttcaatatccaggactgttttgatatattaataatttgaaggattaaattgtcagcaccataccattt |
218 |
Q |
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| T |
3542773 |
gaccgagttggaaagaatcatgattagtgattttcaatatccaggactgttttgatatattaataatttgaaggattaaattgtcaacaccataccattt |
3542872 |
T |
|
| Q |
219 |
caaggactaaattggcgatttgatcaattggtcaatctgaacgagaaataaatacttgtctagaaactactactataatgcaagcttactccttgctcgg |
318 |
Q |
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| T |
3542873 |
caaggactaaattggcgatttgatcaattggtcaatctgaacgagaaataaatacttgtctagaaactactactataatgcaagcttactccttgctcgg |
3542972 |
T |
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| Q |
319 |
-ttgctcccatttgcttatgcagctgcctatg |
349 |
Q |
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| T |
3542973 |
tttgctcccatttgcttatgcagatgcctatg |
3543004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 21538789 - 21538734
Alignment:
| Q |
27 |
gtccttgaaattaacaaaatttcacaatgatctccggatttgaaaattctcaatca |
82 |
Q |
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| T |
21538789 |
gtccttgaagttaacaaaatttcaaaatgatctatgaatttgaaaattctcaatca |
21538734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 20638128 - 20638183
Alignment:
| Q |
27 |
gtccttgaaattaacaaaatttcacaatgatctccggatttgaaaattctcaatca |
82 |
Q |
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||||||||| |||||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
20638128 |
gtccttgaagttaacaaaatttcaaaatgatctatgaatttgaaaattctcaatca |
20638183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 14286406 - 14286461
Alignment:
| Q |
27 |
gtccttgaaattaacaaaatttcacaatgatctccggatttgaaaattctcaatca |
82 |
Q |
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|||||||||||||||||||||| | || |||| ||| ||||| ||||||||||||| |
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| T |
14286406 |
gtccttgaaattaacaaaattttaaaacgatccccgaatttggaaattctcaatca |
14286461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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