View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_low_6 (Length: 317)
Name: NF11116_low_6
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 26454555 - 26454874
Alignment:
| Q |
1 |
ccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactctaaaatgtctcctaaattatgctaaaaaatactatgat |
100 |
Q |
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| T |
26454555 |
ccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactctaaaatgtctcctaaattatgctaaaaaatactatgat |
26454654 |
T |
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| Q |
101 |
tgattatcatcacgaccacatctcttgtcttcatatgttttcatcattttggattat---ttcttcttcaccatcaattatcattatgtcaatactttca |
197 |
Q |
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| T |
26454655 |
tgattatcatcacgaccacatctcttgtcttcatatgttgtcatcattttggattatttcttcttcttcaccatcaattatcattatgtcaatactttca |
26454754 |
T |
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| Q |
198 |
tcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgggattttggttgacaaatggccaat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454755 |
tcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgggattttggttgacaaatggccaat |
26454854 |
T |
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| Q |
298 |
ttgtatctcattcttgatac |
317 |
Q |
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|||||||||||||||||||| |
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| T |
26454855 |
ttgtatctcattcttgatac |
26454874 |
T |
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