View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11116_low_8 (Length: 296)
Name: NF11116_low_8
Description: NF11116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11116_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 41552429 - 41552718
Alignment:
| Q |
1 |
tctacaggtctcctgcaactggcaccacaacaggttaatctatgagaccaatttatggttatcttaagcagatatttcttgtttcagtttgttgtacttc |
100 |
Q |
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| T |
41552429 |
tctacaggtctcctgcaactggcaccacaacaggttaatctatgagaccaatttatggttatcttaagcagatatttcttgtttcagtttgttgtacttc |
41552528 |
T |
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| Q |
101 |
acatatttgcttgatatataaggatgttaattggcggtttcaacatatacggcttttgtttacaatattactttgactgattggacttggccgaagacat |
200 |
Q |
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| T |
41552529 |
acatatttgcttgatatataaggatgttaattggcggtttcaacatatacggcttttgtttacaatattactttgactgattggacttggccgaagacat |
41552628 |
T |
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| Q |
201 |
tttatttcagaaacttcttgtattatgtttttgttgcattttggtattaagttgagttgttctgtttaaccttaaatactcctttctaag |
290 |
Q |
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| T |
41552629 |
tttatttcagaaacttcttgtattatgtttttgttgcattttggtattaagttgagttgttttgtttaaccttaaatactcctttctaag |
41552718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 290
Target Start/End: Original strand, 34255918 - 34256083
Alignment:
| Q |
126 |
gttaattggcggtttcaacatatacggcttttgtttacaatattactttgactgattggacttggccgaagacattttatttcagaaacttc-ttgtatt |
224 |
Q |
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|||||||||||||||| |||||||||| ||| ||||| ||| || ||| |||| |||||| | || ||| |||||| ||||||| |||||| ||||||| |
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| T |
34255918 |
gttaattggcggtttcgacatatacggttttagtttataattttgctt-gacttgttggacatagcagaatacatttcatttcagtaacttcattgtatt |
34256016 |
T |
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| Q |
225 |
atgtttttgttgcattttggtattaagttgagt-tgttctgtttaaccttaaatactcctttctaag |
290 |
Q |
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|||||| ||||||||||| |||||||||||| | |||| |||||||| |||||| || |||| |||| |
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| T |
34256017 |
atgtttatgttgcattttcgtattaagttgaatatgttttgtttaactttaaattcttctttataag |
34256083 |
T |
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