View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_high_15 (Length: 477)
Name: NF11117_high_15
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 200 - 376
Target Start/End: Original strand, 9230968 - 9231145
Alignment:
| Q |
200 |
ggactgtaatgatgttaattgatgaaagggtccctcattaagcaccggcctagttcatttcatttgtttcctttctatttggccacttgtccaatctctt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9230968 |
ggactgtaatgatgttaattgatgaaagggtccctcattaagcaccggcctagttcatttcatttgtttcctttctatatggccacttgtccaatctctt |
9231067 |
T |
|
| Q |
300 |
caatgtccatttcatattttgctta-ttactagctagaagctacttacaaaccttaaatttggttaacaacttcactt |
376 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
9231068 |
caatgtccatttcatattttgcttatttactagctagaagctacttccaaaccttaaatttggttaacaactacactt |
9231145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 9230770 - 9230878
Alignment:
| Q |
1 |
acagggcctatgtcacgagtgtacgacgtggaaagcatagccatgtgggaccacgtggattttttcatcttttgcaaaaggaagggttcccaatgctatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9230770 |
acagggcctatgtcacgagtgtacgacgtggaaagcatagccatgtgggaccacgtggattttttcatcttttgcaaaaggaagggttcccaatgctatg |
9230869 |
T |
|
| Q |
101 |
tgtagacta |
109 |
Q |
| |
|
| ||||||| |
|
|
| T |
9230870 |
tatagacta |
9230878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 9231139 - 9231189
Alignment:
| Q |
408 |
tacactttctatcttttacctcattcaggtacgtatacgcaaggctggtat |
458 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
9231139 |
tacactttctatcttttacctgattcaggtacgtatacgcaaggttggtat |
9231189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University