View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_high_17 (Length: 457)
Name: NF11117_high_17
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 51294280 - 51294701
Alignment:
| Q |
19 |
aatatgggaggcaagaagtcctcttccttttgtggtatgttgaagtcttgtttctcaagtggaggaagcagtagggatgattattactattatgatgatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51294280 |
aatatgggaggcaagaagtcctcttccttttgtggtatgttgaagtcttgtttctcaagtggaggaagcagtagggatgattattactattatgatgatg |
51294379 |
T |
|
| Q |
119 |
atggcagtagcagaaggatatttgcaagtgatgaagacagaggtcgttgggttgctgagcctggtattgacaagaaagcttctgctttcattgctagatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51294380 |
atggcagtagcagaaggatatttgcaagtgatgaagacagaggtcgttgggttgctgagcctggtattgacaagaaagcttctgctttcattgctagatt |
51294479 |
T |
|
| Q |
219 |
ctatgccaaccgagccactgattctgagcaacaaattgcttcttgaaatttcattttaacttcttcgttcattcttgtttttcctaccaataatccccct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51294480 |
ctatgccaaccgagccactgattctgagcaacaaattgcttcttgaaatttcattttaacttc----ttcattcttgtttttcctaccaataatccccct |
51294575 |
T |
|
| Q |
319 |
ccccaaatgtaaaatataatgttttctttatttggttgtagtcagttttataataatttactgcagttgttcttgatcagcgtttgattatatatatatg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
51294576 |
ccccaaatgtaaaatataatgttttctttatttggttgtagtcagttttataataatttactgcagttgttcttgatcatcgtttgat----tatatatg |
51294671 |
T |
|
| Q |
419 |
atggtggtctagttctttcttttccctttg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51294672 |
atggtggtctagttctttcttttccctttg |
51294701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 19575032 - 19574945
Alignment:
| Q |
130 |
agaaggatatttgcaagtgatgaagacagaggtcgttgggttgctgagcctggtattgacaagaaagcttctgctttcattgctagat |
217 |
Q |
| |
|
||||| || ||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
19575032 |
agaagaatgtttgcaagtgatgaagatagaggttgttgggttgctgagcctggtattgataggaaagcttctgatttcattgctagat |
19574945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University