View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_high_18 (Length: 449)
Name: NF11117_high_18
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 73 - 441
Target Start/End: Original strand, 13147762 - 13148130
Alignment:
| Q |
73 |
cttgaaaagctatttcttcatcaacattttccggattacaattgcaaaaggaatcttaataattcgatttccatattatgctcaatttcgacttgttgag |
172 |
Q |
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| T |
13147762 |
cttggaaagctatttcttcatcaacattttccggattacaattgcaaaaggaatcttaataattcgatttccatattatgctcaatttcgacttgttgag |
13147861 |
T |
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| Q |
173 |
atttattaaatttgtttactttttgtcttctcaaaaacataccgatctcactcgattcatcttgagatattctagtttattcatgtaactcatgcacatt |
272 |
Q |
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| T |
13147862 |
atttattaaatttatttaccttttgtcttctcaaaaacataccgatctcactcgattcatcttgagatattctagtttattcatgtaactcatgcacatt |
13147961 |
T |
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| Q |
273 |
ttgagagaatacgaaactttgcaatatatgcttgctttcctgtaaattaattgaagaacttgatggaaaaatttcaaactcagagttcatcagttgaaat |
372 |
Q |
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| T |
13147962 |
ttgagagaatacgaaactttgcaatatatgcttgctttcctgtaaattaattgaagaacttgatggaaaaatttcaaactcagagttcatcagttgaaat |
13148061 |
T |
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| Q |
373 |
tcaagaacattataaagcatatcacaggttattacaacctttaccttccttcttccttttgttcatctc |
441 |
Q |
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| T |
13148062 |
tcaagaacattataaagcatatcacaggttattacaacctttaccttccttcttccttttgttcatctc |
13148130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 13101309 - 13101373
Alignment:
| Q |
315 |
taaattaattgaagaacttgatggaaaaatttcaaactcagagttcatcagttgaaattcaagaa |
379 |
Q |
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| T |
13101309 |
taaactaattgaattatttgatcgaaaaacttcaaagtcaaagttcatcagttgagattcaagaa |
13101373 |
T |
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