View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_high_20 (Length: 386)
Name: NF11117_high_20
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 26954636 - 26954995
Alignment:
| Q |
17 |
agacagtctcaatacttatccatgacatgacctgacattgcatttactgttaatataatctttcttagttcgtgcaaagattcactaccactcatttgac |
116 |
Q |
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| T |
26954636 |
agacagtgtcaatacttatccatgacatgacctgacattgcatttactgttaatataatctttcttagttcgtgcaaagatccactaccactcatttgac |
26954735 |
T |
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| Q |
117 |
tcctctaaagaggattctgcgccgcctcaaaggtacaattttcatggcctttttcttcggaaacagaattcttctacactcattgcatataaggatactg |
216 |
Q |
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|||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26954736 |
tcctctaaagaggattctgcaccgcatcagaggtacaattttcatggcctttttcttcggaaacagaattcttctacactcattgcatataaggatactg |
26954835 |
T |
|
| Q |
217 |
attggactgataataaagatgactacacatctgctcacattgtctactagagttccaacctcatcttgtggaaatcatcg-----aagagcagtagcaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26954836 |
attggactgataataaagatgactacacatctgctcacattgtctactagagttccaacctcatcttgtggaaatcatcgaagcaaagagcagtagcaag |
26954935 |
T |
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| Q |
312 |
gtcatccaccaaggctaagtacaaagcattagccattattgcatcctggatcaactctct |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26954936 |
gtcatccaccaaggctaagtacaaagcattagccattattgcatcctggatcaactctct |
26954995 |
T |
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