View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_high_30 (Length: 337)
Name: NF11117_high_30
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_high_30 |
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| [»] scaffold0361 (2 HSPs) |
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| [»] scaffold0036 (2 HSPs) |
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| [»] scaffold0004 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 19769598 - 19769291
Alignment:
| Q |
12 |
gagaagaaggaaaaaagaatgatcgctttaatggtaaggtattctgttcagagagatcttcgcttggatacttaccaggtccaggcatatccaagcgaaa |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19769598 |
gagaggaaggaaaaaagaatgatcgctttaatggtaaggtattctgttcagagagatcttcgcttggatacttaccaggtccaggtatatccaagcgaaa |
19769499 |
T |
|
| Q |
112 |
aagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaagcataaaggaatgtattgtattagttaatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19769498 |
aagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaagcataaaggaatgtattgtattagttaatc |
19769399 |
T |
|
| Q |
212 |
aaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgaggaaatcgtactggcgcatg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19769398 |
aaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcgagtgcgaggaaatcgtactggcgcatg |
19769299 |
T |
|
| Q |
312 |
gcgttggt |
319 |
Q |
| |
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|||||||| |
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| T |
19769298 |
gcgttggt |
19769291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 45117854 - 45117910
Alignment:
| Q |
217 |
aattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaa |
273 |
Q |
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|||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||| |
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| T |
45117854 |
aattaaataaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa |
45117910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 9209 - 9303
Alignment:
| Q |
199 |
gtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg |
293 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
9209 |
gtattagttaatcaaatcaattaaataaaatagtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgcgagg |
9303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 9002 - 9120
Alignment:
| Q |
82 |
cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaa |
181 |
Q |
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||||||| |||||||||||||||| |||| |||| | || ||| ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
9002 |
cttaccaagtccaggcatatccaaacgaaggagcagacaatcctctgtctctttcgcatcccaaccacgtcgaactccactgtctccaattccacgtgaa |
9101 |
T |
|
| Q |
182 |
gcataaaggaatgtattgt |
200 |
Q |
| |
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||| ||||||||| ||||| |
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| T |
9102 |
gcagaaaggaatggattgt |
9120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 16359347 - 16359257
Alignment:
| Q |
199 |
gtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgc |
289 |
Q |
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|||||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
16359347 |
gtattagttaatcaaatcaattaaataaaacagtgaaattgagtaaaagagcgataacaactacctgagaggaaatcgttgcggcgagtgc |
16359257 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 16359562 - 16359446
Alignment:
| Q |
84 |
taccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaagc |
183 |
Q |
| |
|
||||| |||||| ||||||||| |||| |||| |||| ||| ||||||||||||||||||||| |||| | |||||||| ||||||||||||||||||| |
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| T |
16359562 |
taccaagtccagtcatatccaaacgaaggagcatagaatcctctgtctctttcgcatcccaaccacgtcaagctccaccgtctccaattccacgtgaagc |
16359463 |
T |
|
| Q |
184 |
ataaaggaatgtattgt |
200 |
Q |
| |
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| |||||| || ||||| |
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| T |
16359462 |
agaaaggactggattgt |
16359446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 36237121 - 36237215
Alignment:
| Q |
82 |
cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccac |
176 |
Q |
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||||||| |||||||||||||||| |||| ||||| | || ||| | ||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
36237121 |
cttaccaagtccaggcatatccaaacgaagaagcagaaaatcctctatctctttcgcatcccaaccacgtcgaactccaccggatccaattccac |
36237215 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 44162175 - 44162082
Alignment:
| Q |
200 |
tattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg |
293 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||| |
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| T |
44162175 |
tattagttaatcaaatcaattaaataaaatagtgaaattgagtaaaagagcgataacaactaccggagaggaaattgtcgcggagagtgcgagg |
44162082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 26721093 - 26721017
Alignment:
| Q |
217 |
aattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg |
293 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
26721093 |
aattaaataaaatagagaaattgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggcgagtgtgagg |
26721017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 98536 - 98418
Alignment:
| Q |
82 |
cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaa |
181 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||| |||| ||| | ||||||||||||||||||| ||||||||||||||| |||||||||| | ||| |
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|
| T |
98536 |
cttaccaagtccaggcatatccaaacgaagaagcagagaatcctctatctctttcgcatcccaaccacgtcgaactccaccggatccaattccatgggaa |
98437 |
T |
|
| Q |
182 |
gcataaaggaatgtattgt |
200 |
Q |
| |
|
||| ||||||||| ||||| |
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| T |
98436 |
gcagaaaggaatggattgt |
98418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 98360 - 98271
Alignment:
| Q |
199 |
gtattagttaatcaaatcaattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgc |
289 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
98360 |
gtattagttaatcaaaacaattaaattaaatagtgaaagtgagtaaa-gagtgataacaaccacctgagaggaaatcgtcgcggccagtgc |
98271 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 246887 - 246769
Alignment:
| Q |
82 |
cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaa |
181 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||| |||| ||| |||||||||||||||||| || |||||| |||||||| | ||||| ||||||||| |
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|
| T |
246887 |
cttaccaagtccaggcatatccaaacgaagaagcagagaatcctctgtctctttcgcatcccagccgcgtcgagctccaccggcaccaatcccacgtgaa |
246788 |
T |
|
| Q |
182 |
gcataaaggaatgtattgt |
200 |
Q |
| |
|
||| | ||||||| ||||| |
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|
| T |
246787 |
gcagagaggaatggattgt |
246769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 246633 - 246575
Alignment:
| Q |
235 |
aattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg |
293 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
246633 |
aattgagtgagagagcgataacaactacctgagaggaaatcgtcgcggcgagtgcgagg |
246575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 31231372 - 31231278
Alignment:
| Q |
82 |
cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccac |
176 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||| |||| ||| | ||||||||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
31231372 |
cttaccaagtccaggcatatccaaacgaagaagcagagaatcctctatctctttcgcatcccaaccacgtcgaactccaccggatccaattccac |
31231278 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 10495854 - 10495919
Alignment:
| Q |
228 |
atagggaaattgagtaaaagagtgataacaactacctgagaggaaatcgtcgcggcaagtgcgagg |
293 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
10495854 |
atagtgaatttgagtaaaagagcgataacaactacctgagaggaaatcgtcgcggaaagtgcgagg |
10495919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 2986210 - 2986154
Alignment:
| Q |
217 |
aattaaatgaaatagggaaattgagtaaaagagtgataacaactacctgagaggaaa |
273 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
2986210 |
aattaaataaaatagagaaattgagtaaaagagcgataacaactacttgagaggaaa |
2986154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 41570375 - 41570275
Alignment:
| Q |
82 |
cttaccaggtccaggcatatccaagcgaaaaagcaaagaaccctatgtctctttcgcatcccaacctcgtcgaactccaccgactccaattccacgtgaa |
181 |
Q |
| |
|
||||||| |||||||| ||||||| |||| ||| | |||| ||| ||||||| ||||||||| || ||||||||||||| |||| |||||||||||| |
|
|
| T |
41570375 |
cttaccaagtccaggcgtatccaaacgaagaaggagagaatcctttgtctct--cgcatcccagccgcgtcgaactccacttgctccgattccacgtgaa |
41570278 |
T |
|
| Q |
182 |
gca |
184 |
Q |
| |
|
||| |
|
|
| T |
41570277 |
gca |
41570275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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