View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_high_35 (Length: 316)
Name: NF11117_high_35
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_high_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 26666444 - 26666728
Alignment:
| Q |
20 |
gtgaggtttatactcaaaaagttaacagattggtagtcctctgcattagaaaagtgtggttcaatatctgaagtatcactgccacatcttgtctttatgt |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26666444 |
gtgagttttatactcaaaaagttaacagattggtga--ctatgcattagaaaagtgtggttcaatatgtgaagtatcactgccacatcttgtctttatgt |
26666541 |
T |
|
| Q |
120 |
ttaaattgtgtaatattgttaaaaaatatatgttacaatactgtgacagaatattggttttatgtttttcatacacaagctcaaaagtagaccattgcag |
219 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26666542 |
ttaaattgtgtaatattgtaaaaaaaaatatgttacaatactgtgacagaatattggttttatgtttttcatacacaagctcaaaagtagaccattgcag |
26666641 |
T |
|
| Q |
220 |
aacatgatgtagaagtagtgactaaggatgactctgagatttgtatttggttgatgaggtaagagtggtgacattctctgttctctg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26666642 |
aacatgatgtagaagtagtgactaaggatgactctgagatttgtatttggttgatgaggtaagagtggtgacattctctgttttctg |
26666728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 29301079 - 29301126
Alignment:
| Q |
142 |
aaaatatatgttacaatactgtgacagaatattggttttatgtttttc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
29301079 |
aaaatatatgttacaatactgtgacagaatatttgttttctgtttttc |
29301126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 29307741 - 29307788
Alignment:
| Q |
142 |
aaaatatatgttacaatactgtgacagaatattggttttatgtttttc |
189 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
29307741 |
aaaatatatgttacaatgctgtgacagaatattggttttctgtttttc |
29307788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 29307934 - 29307975
Alignment:
| Q |
186 |
tttcatacacaagctcaaaagtagaccattgcagaacatgat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29307934 |
tttcatacacaagctcaaaagtagaccattgcagaatatgat |
29307975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 29301274 - 29301311
Alignment:
| Q |
190 |
atacacaagctcaaaagtagaccattgcagaacatgat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29301274 |
atacacaagctcaaaagtagaccattgcagaatatgat |
29301311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University