View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11117_high_37 (Length: 289)

Name: NF11117_high_37
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11117_high_37
NF11117_high_37
[»] chr1 (3 HSPs)
chr1 (19-278)||(49686693-49686952)
chr1 (27-278)||(49690970-49691218)
chr1 (27-278)||(49679336-49679584)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 49686693 - 49686952
Alignment:
Q  19 gaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49686693 gaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgat 49686792  T
Q  119 ttttacttcggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcac 218  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49686793 ttttacttcggtgattcaacaatatctaatgatgagcccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcac 49686892  T
Q  219 tttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49686893 tttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcat 49686952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 49690970 - 49691218
Alignment:
Q  27 acataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttactt 126  Q
    ||||||||||||||||||||| |||||||| |||||||| ||   |||| |||| ||||||||||| ||||||| | |||| || |||||||||||||||    
T  49690970 acataacagctttcaaatgcaaccatacccgaaaattaggcattcaccctccaagtaatttcttcataaatagttcttgtcatccctatgatttttactt 49691069  T
Q  127 cggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggt 226  Q
     || ||||   |||||| | |||||||||||||||||||||||  ||||||||   | || ||||||||||||| | ||||||| ||||||||||| |||    
T  49691070 tggcgatt---caatatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggt 49691166  T
Q  227 aacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcat 278  Q
    ||||||||||  || ||| || |||||||||||||| | ||| |||||||||    
T  49691167 aacccatttccctttttaactaatgaaattacctttcagttccaatcttcat 49691218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 49679336 - 49679584
Alignment:
Q  27 acataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttactt 126  Q
    ||||||||||||||||||||| || ||||| |||||||| || | | || |||| ||||||||||| ||||||| | |||| || |||||||||||||||    
T  49679336 acataacagctttcaaatgcaaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatgatttttactt 49679435  T
Q  127 cggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggt 226  Q
     || ||||   |||||| | |||||||||||||||||||||||  ||||||||   | || ||||||||||||| | ||||||| ||||||||||| ||     
T  49679436 tggcgatt---caatatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggc 49679532  T
Q  227 aacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcat 278  Q
    || ||||||| ||| |||| |||| |||| |||||| | |||||| ||||||    
T  49679533 aatccatttccattcttagatgatcaaataacctttcagttcaaaccttcat 49679584  T

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