View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11117_high_4 (Length: 732)

Name: NF11117_high_4
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11117_high_4
NF11117_high_4
[»] chr3 (10 HSPs)
chr3 (1-723)||(30406208-30406938)
chr3 (578-696)||(25132369-25132487)
chr3 (4-144)||(3440357-3440496)
chr3 (47-194)||(1097837-1097982)
chr3 (600-700)||(19911007-19911104)
chr3 (48-149)||(54045131-54045231)
chr3 (78-213)||(19925058-19925192)
chr3 (320-365)||(26269848-26269893)
chr3 (278-368)||(3440179-3440269)
chr3 (70-169)||(16239201-16239299)
[»] chr5 (9 HSPs)
chr5 (4-201)||(32199922-32200117)
chr5 (6-213)||(19847760-19847966)
chr5 (549-694)||(7003443-7003591)
chr5 (4-212)||(23409546-23409753)
chr5 (278-365)||(23409376-23409463)
chr5 (226-358)||(7003121-7003252)
chr5 (270-378)||(35414934-35415042)
chr5 (126-192)||(7003003-7003069)
chr5 (59-169)||(28887655-28887764)
[»] chr2 (6 HSPs)
chr2 (4-203)||(40489716-40489914)
chr2 (4-203)||(40516217-40516415)
chr2 (578-721)||(16587911-16588054)
chr2 (68-213)||(9547842-9547986)
chr2 (340-411)||(16315823-16315894)
chr2 (291-392)||(11169865-11169966)
[»] chr1 (4 HSPs)
chr1 (4-149)||(15223253-15223397)
chr1 (83-213)||(1073341-1073470)
chr1 (63-188)||(12656852-12656976)
chr1 (275-381)||(1073549-1073655)
[»] chr4 (6 HSPs)
chr4 (283-418)||(11773538-11773673)
chr4 (279-358)||(29546260-29546339)
chr4 (278-418)||(7320299-7320439)
chr4 (4-111)||(41996524-41996631)
chr4 (84-159)||(25708120-25708194)
chr4 (75-133)||(29546502-29546559)
[»] chr7 (7 HSPs)
chr7 (278-366)||(27544694-27544782)
chr7 (6-200)||(47824888-47825083)
chr7 (18-202)||(31720174-31720358)
chr7 (4-144)||(21839404-21839543)
chr7 (599-688)||(9084335-9084424)
chr7 (4-111)||(27545030-27545137)
chr7 (55-212)||(3743748-3743904)
[»] chr6 (10 HSPs)
chr6 (4-143)||(15107127-15107265)
chr6 (62-184)||(20757278-20757399)
chr6 (312-413)||(14362239-14362341)
chr6 (74-144)||(17111457-17111526)
chr6 (578-691)||(10382610-10382722)
chr6 (278-378)||(15106893-15106993)
chr6 (73-144)||(17111633-17111703)
chr6 (278-362)||(24954929-24955013)
chr6 (48-131)||(24954683-24954765)
chr6 (127-213)||(14362037-14362123)
[»] scaffold0128 (3 HSPs)
scaffold0128 (66-187)||(42008-42128)
scaffold0128 (523-694)||(41487-41652)
scaffold0128 (210-365)||(41810-41967)
[»] chr8 (1 HSPs)
chr8 (632-722)||(30926613-30926703)
[»] scaffold0002 (1 HSPs)
scaffold0002 (270-324)||(460678-460732)


Alignment Details
Target: chr3 (Bit Score: 674; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 1 - 723
Target Start/End: Original strand, 30406208 - 30406938
Alignment:
Q  1 actaaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30406208 actaaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaaga 30406307  T
Q  101 acttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggttgatggatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30406308 acttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggttgatggatc 30406407  T
Q  201 cgctaaatgaacaagttgtcaaatatgaccaaataggccgcatgtcaagaacaaacgaacatttgattccttgcaacccacaaccactaacacacaactg 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30406408 cgctaaatgaacaagttgtcaaatatgaccaaataggctgcatgtcaagaacaaacgaacatttgattccttgcaacccacaaccactaacacacaactg 30406507  T
Q  301 agcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaagtcaccaagcaaaaactgaaaccttcagaggaact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30406508 agcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaagtcaccaagcaaaaactgaaaccttcagaggaact 30406607  T
Q  401 tccttcctccataggagatctgcgaagaccatatcaaaattatgggagggcgtccaacatgtgagggtgcggtatgc--------ccatataccccactg 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  30406608 tccttcctccataggagatctgcgaagaccatatcaaaattatgggagggcgtccaacatgtgagggtgcggtatgcccctctaaccatataccccactg 30406707  T
Q  493 ttggatcaaggaaccacgtctactcatcgtcaatatcaacctgcagcacaatggtcagcaataaagtctcacacttatctaacatctcctcccacaccca 592  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30406708 ttggatcaaggaaccacgtctacacatcgtcaatatcaacctgcagcacaatggtcagcaataaagtctcacacttatctaacatctcctcccacaccca 30406807  T
Q  593 taaccaccttctcctcttccacgcctcccctccctcgttccaccccaaatcaaacatttgcgccacagttaacaatttcttttctgataaatcaaacaaa 692  Q
    ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30406808 taatctccttctccacttccacgcctcccctccctcgttccaccccaaatcaaacatttgcgccacagttaacaatttcttttctgataaatcaaacaaa 30406907  T
Q  693 cgacgaaatctaactcaaagatggacatcat 723  Q
    | ||||||||||||||||||| |||||||||    
T  30406908 caacgaaatctaactcaaagagggacatcat 30406938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 578 - 696
Target Start/End: Original strand, 25132369 - 25132487
Alignment:
Q  578 ctcctcccacacccataaccaccttctcctcttccacgcctcccctccctcgttccaccccaaatcaaacatttgcgccacagttaacaatttcttttct 677  Q
    ||||||||||||||| |||| ||||||||  ||||| ||||| |||||||| | ||||||||| ||||||||||| |||||| ||| | |||| || |||    
T  25132369 ctcctcccacacccacaacctccttctccatttccaagcctctcctccctcatcccaccccaagtcaaacatttgagccacatttagccatttgttatct 25132468  T
Q  678 gataaatcaaacaaacgac 696  Q
    ||||| |||||||||||||    
T  25132469 gataagtcaaacaaacgac 25132487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 3440496 - 3440357
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    |||||||||||| |||||||||||||||||||| || | | | | ||| |||||| || |||| | |  ||||| ||| ||| |||||||||||||||||    
T  3440496 aaaaggaaagaagtttaatattctccaaaagctgaagaagagtgctttttttgccacgaaaaatcttgtcatttctttcctttcaaatcacccaagaact 3440397  T
Q  104 tgcaaacccagatcaaaaacatgaaagaacaccttgatttt 144  Q
     ||||| ||||||||| ||||||||||| | ||||||||||    
T  3440396 cgcaaa-ccagatcaataacatgaaagagctccttgatttt 3440357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 1097837 - 1097982
Alignment:
Q  47 gttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttac 146  Q
    ||||||||| ||||| ||||| ||| ||||| ||| ||||||||||||| ||||  ||||||||  |||| |||  |||||| |||||||  |||||| |    
T  1097837 gttttctttccctcgaaaaagtctatcatttttttccttccaaatcacc-aagagtttgcaaact-agattaaatgcatgaaggaacaccgcgattttgc 1097934  T
Q  147 atgacttgaagaggtaccaaactagagaaaatgatccacaatggttga 194  Q
    | |||| |||||||||||||||| ||||||||| || |||||||||||    
T  1097935 aagactggaagaggtaccaaactggagaaaatggtcaacaatggttga 1097982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 600 - 700
Target Start/End: Original strand, 19911007 - 19911104
Alignment:
Q  600 cttctcctcttccacgcctcccctccctcgttccaccccaaatcaaacatttgcgccacagttaacaatttcttttctgataaatcaaacaaacgacgaa 699  Q
    ||||||| |||||||||||||||| | ||   ||||||||||| |||||||||||||| |||||| ||||| |||||| | ||||||||||| |||||||    
T  19911007 cttctccacttccacgcctccccttcatc---ccaccccaaatgaaacatttgcgccatagttaataatttattttctaacaaatcaaacaagcgacgaa 19911103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 54045131 - 54045231
Alignment:
Q  48 ttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttaca 147  Q
    |||||||| |||| ||||| |||||||||| ||| ||||||||| ||||||||| | ||| ||| |||||| || ||||||||| |||||||||||||||    
T  54045131 ttttcttttcctccgaaaatcctaacatttttttccttccaaattacccaagaaatcgcatacc-agatcacaatcatgaaagagcaccttgattttaca 54045229  T
Q  148 tg 149  Q
    ||    
T  54045230 tg 54045231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 19925058 - 19925192
Alignment:
Q  78 atttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaa 177  Q
    |||| |||||||||||||||||| | |||||||| | || ||| |||| |||||||||  |||||||  | ||| ||| || ||||||||||  ||||||    
T  19925058 atttccttccaaatcacccaagagcctgcaaacc-atattaaatacataaaagaacactgtgattttggaagacctgaggaagtaccaaactgaagaaaa 19925156  T
Q  178 tgatccacaatggttgatggatccgctaaatgaaca 213  Q
    ||||||||||||||||| ||||| | | ||||||||    
T  19925157 tgatccacaatggttgagggatctgttgaatgaaca 19925192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Complemental strand, 26269893 - 26269848
Alignment:
Q  320 cctcttcgaaataaattctccttagttggcaatctattccgaaaaa 365  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  26269893 cctcttcgaaataaattccccttagttggcaatctattccgaaaaa 26269848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 3440269 - 3440179
Alignment:
Q  278 ccacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaagtc 368  Q
    |||||||||| |||||||||||||| ||||||||  | ||| |||||||  || |||||| |||||||||| ||||||||  |||||||||    
T  3440269 ccacaaccaccaacacacaactgagactcatgtgctacaatacctcttcagaacaaattcaccttagttggtaatctattatgaaaaagtc 3440179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 16239299 - 16239201
Alignment:
Q  70 taacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaact 169  Q
    |||||||| ||| ||||||||| || |||||||||||||| ||| || | | |||| ||||||||||  |||||| || ||| |||||| ||||||||||    
T  16239299 taacatttctttccttccaaatgactcaagaacttgcaaa-ccaaatgagatacataaaagaacaccgcgattttgcaagacctgaagaagtaccaaact 16239201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 32200117 - 32199922
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    ||||| |||||| ||| ||  ||| ||||||||||||||||||||||||||||| ||  ||||||||| ||||| ||| ||||||||||| | |||||||    
T  32200117 aaaagaaaagaagtttgatcctcttcaaaagctaaaaaggggagttttctttgcttcttaaaagcctatcatttctttccttccaaatcatc-aagaact 32200019  T
Q  104 tgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggttgatggatcc 201  Q
     ||||||| | |||||| |||||||||||||| |||| |||||||||| ||||||||||| ||| | |||||||||||||||||||| | ||||||||    
T  32200018 agcaaaccaa-atcaaagacatgaaagaacactttgactttacatgacctgaagaggtacaaaattggagaaaatgatccacaatggataatggatcc 32199922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 19847966 - 19847760
Alignment:
Q  6 aaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaacttg 105  Q
    |||||||||| ||||||| ||| |||||| |   |||||||||||||| | ||||  ||||  ||   |||| ||| ||||||||||||||||||||| |    
T  19847966 aaggaaagaagtttaatactcttcaaaagttgtgaaggggagttttctgtacctcaaaaaaatctcgtatttctttccttccaaatcacccaagaactag 19847867  T
Q  106 caaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggttgatggatccgcta 205  Q
    |||||| | || ||||||||||| ||||  | ||||||| |||||| |||||||||||||||||  ||||| |||||||||||| ||||||||||||||     
T  19847866 caaaccaa-attaaaaacatgaaggaacgtcgtgattttgcatgacctgaagaggtaccaaactgaagaaagtgatccacaatgtttgatggatccgctg 19847768  T
Q  206 aatgaaca 213  Q
    ||||||||    
T  19847767 aatgaaca 19847760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 549 - 694
Target Start/End: Original strand, 7003443 - 7003591
Alignment:
Q  549 agcaataaagtctcacacttatctaacatctcctcc---cacacccataaccaccttctcctcttccacgcctcccctccctcgttccaccccaaatcaa 645  Q
    |||||||||||   |||||  |||||||||||||||   ||||||||||||| ||||||||  || || |||||||||| ||| | ||||||||||||||    
T  7003443 agcaataaagttatacactcctctaacatctcctcctctcacacccataacctccttctccaatttcatgcctcccctcgctcatcccaccccaaatcaa 7003542  T
Q  646 acatttgcgccacagttaacaatttcttttctgataaatcaaacaaacg 694  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||||    
T  7003543 acatttgcgacacaattaacaatttattttctgataaatcaaacaaacg 7003591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 23409753 - 23409546
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    ||||||||||||  |||| |||||||||||||| || | | || |||||||  ||  |||| |||||| ||||||||| |||||||||||  ||||||||    
T  23409753 aaaaggaaagaagcttaacattctccaaaagctgaacaagagaattttcttaaccatggaatagcctatcatttatttccttccaaatcattcaagaact 23409654  T
Q  104 tgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggttgatggatccgc 203  Q
     ||||| | ||||||||  ||||||||||||| |||||| | | | || |||||||||||||||||   ||||||||||||||||| |  |||||||| |    
T  23409653 agcaaatc-agatcaaatgcatgaaagaacacattgattctgcgtaacctgaagaggtaccaaactgatgaaaatgatccacaatgctaaatggatccac 23409555  T
Q  204 taaatgaac 212  Q
    |||||||||    
T  23409554 taaatgaac 23409546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 23409463 - 23409376
Alignment:
Q  278 ccacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaa 365  Q
    |||||||||||||||||||||||||||||||  |||||||| ||||| |||||||||||   ||||| |||||||| ||||| |||||    
T  23409463 ccacaaccactaacacacaactgagcctcataaggaataattcctctacgaaataaatttgacttagatggcaatcaattccaaaaaa 23409376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 358
Target Start/End: Original strand, 7003121 - 7003252
Alignment:
Q  226 tgaccaaataggccgcatgtcaagaacaaacgaacatttgattccttgcaacccacaaccactaacacacaactgagcctcatgtggaataatccctctt 325  Q
    |||||||| | ||||||  | ||||||||| |||||| || || || ||| |||||| |||| |||||||| ||| |||||||||||||| ||||| | |    
T  7003121 tgaccaaaaatgccgcaatttaagaacaaatgaacatctgttttct-gcatcccacacccaccaacacacatctgcgcctcatgtggaatgatcccccat 7003219  T
Q  326 cgaaataaattctccttagttggcaatctattc 358  Q
     ||||||||||  ||||||||||||||||||||    
T  7003220 tgaaataaatttgccttagttggcaatctattc 7003252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 35415042 - 35414934
Alignment:
Q  270 cttgcaacccacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaagtca 369  Q
    ||||||| ||||||||| ||||||| || ||||| || ||   |||||||| ||||||  |||||||| || |||||||| ||||||||||||||||||     
T  35415042 cttgcaaaccacaaccagtaacacaaaattgagcatcgtgataaataatccatcttcgggataaattccccatagttggcgatctattccgaaaaagtcg 35414943  T
Q  370 ccaagcaaa 378  Q
    |||| ||||    
T  35414942 ccaaacaaa 35414934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 7003003 - 7003069
Alignment:
Q  126 gaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggtt 192  Q
    |||||| ||||  |||||| |||| | |||||| ||||||||||  |||||||||||||||||||||    
T  7003003 gaaagagcaccacgattttgcatgtcctgaagacgtaccaaactgaagaaaatgatccacaatggtt 7003069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 28887764 - 28887655
Alignment:
Q  59 tcggaaaagcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaaga 158  Q
    ||||||||  ||| ||||| ||| ||||||| | ||||||||||||||||| ||| || | | |||| ||||||||||  |||||| || ||| ||||||    
T  28887764 tcggaaaattctagcatttctttccttccaactaacccaagaacttgcaaa-ccaaatgagatacataaaagaacaccacgattttgcaagacctgaaga 28887666  T
Q  159 ggtaccaaact 169  Q
     ||||||||||    
T  28887665 agtaccaaact 28887655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 40489716 - 40489914
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    ||||||||||||  || ||| |||||||||| | | ||||||| |||||||| |||| ||||| | ||  |||| ||| |||||||||||| || |||||    
T  40489716 aaaaggaaagaagcttgatactctccaaaagttgataaggggatttttctttacctctgaaaatcgtataatttctttccttccaaatcacgcaggaact 40489815  T
Q  104 tgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggttgatggatccgc 203  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||   || || ||||||||| ||||||||||||||||    
T  40489816 tgcaaacc-agatcaaaaacatgaaagaacgccttgattttacatgccctgaagaggtacgaaaccgaaggaagtgatccacattggttgatggatccgc 40489914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 40516217 - 40516415
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    ||||||||| ||  || ||| |||||||||||| | ||||||| |||||||| |||  ||||| ||||  |||| ||| |||||||||||| ||||||||    
T  40516217 aaaaggaaataagcttgatactctccaaaagctgataaggggatttttctttacctttgaaaatcctataatttctttccttccaaatcacgcaagaact 40516316  T
Q  104 tgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggttgatggatccgc 203  Q
    |||||| | |||||||| |||||||||||||||||||||||||||| | |||| |||||| ||||   || || ||||||||| ||||||||||||||||    
T  40516317 tgcaaatc-agatcaaagacatgaaagaacaccttgattttacatgccctgaacaggtacgaaaccgaaggaagtgatccacattggttgatggatccgc 40516415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 578 - 721
Target Start/End: Original strand, 16587911 - 16588054
Alignment:
Q  578 ctcctcccacacccataaccaccttctcctcttccacgcctcccctccctcgttccaccccaaatcaaacatttgcgccacagttaacaatttcttttct 677  Q
    ||||||||||| |||||| | |||||||| |||||| || ||||||||||||| |||||||  | ||||||||| | ||||||| | | |||| | ||||    
T  16587911 ctcctcccacatccataatctccttctccacttccaagcatcccctccctcgtcccaccccctagcaaacatttccaccacagtaatcgatttatattct 16588010  T
Q  678 gataaatcaaacaaacgacgaaatctaactcaaagatggacatc 721  Q
    ||||||||  ||||| ||||||| ||| | ||||||||||||||    
T  16588011 gataaatcgtacaaatgacgaaacctatcacaaagatggacatc 16588054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 9547842 - 9547986
Alignment:
Q  68 cctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaa 167  Q
    |||| ||||| ||| |||||||||||| |||  ||| ||||||  | |||||| ||||||||||||||||||||||| |   || ||||| |||||||||    
T  9547842 cctatcatttctttccttccaaatcactcaaacactagcaaacgaa-atcaaagacatgaaagaacaccttgattttgcgatacctgaagtggtaccaaa 9547940  T
Q  168 ctagagaaaatgatccacaatggttgatggatccgctaaatgaaca 213  Q
    ||   |||||||||| |||||  |  ||| ||||||| ||||||||    
T  9547941 ctgatgaaaatgatcaacaatattacatgaatccgctgaatgaaca 9547986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 411
Target Start/End: Complemental strand, 16315894 - 16315823
Alignment:
Q  340 cttagttggcaatctattccgaaaaagtcaccaagcaaaaactgaaaccttcagaggaacttccttcctcca 411  Q
    |||||| ||||| |||||||| ||||| ||||||||||| |  ||||||||||  ||||| |||||||||||    
T  16315894 cttagtgggcaacctattccggaaaagacaccaagcaaacatggaaaccttcaacggaacgtccttcctcca 16315823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 392
Target Start/End: Original strand, 11169865 - 11169966
Alignment:
Q  291 cacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaagtcaccaagcaaaaactgaaacctt 390  Q
    |||||||||||| ||||||||  | ||| |||||||  ||||||||| |||||||||  ||||||||| ||| || ||  |||||||| || || |||||    
T  11169865 cacacaactgagactcatgtgatacaattcctcttcagaataaattcaccttagttgataatctattcagaagaaatcgtcaagcaaacaccgacacctt 11169964  T
Q  391 ca 392  Q
    ||    
T  11169965 ca 11169966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 15223253 - 15223397
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    |||||||||| | ||| |||  ||||||||| | | ||||||| ||||| ||||||| ||||| |||| ||||| ||| ||||||||| |||||||||||    
T  15223253 aaaaggaaagtagtttgatacactccaaaagatgataaggggatttttccttgcctctgaaaatcctatcatttctttccttccaaattacccaagaact 15223352  T
Q  104 tgcaaacccagatcaaaaacatgaaagaacaccttgattttacatg 149  Q
    |||||| |||||||||| |||||||| |||||||||||||||||||    
T  15223353 tgcaaa-ccagatcaaagacatgaaataacaccttgattttacatg 15223397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 1073341 - 1073470
Alignment:
Q  83 cttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatc 182  Q
    |||| ||||||||||  | |||||||||| |||| ||| |||| |||||||||||||||||| || ||| ||| || ||||||||||| |||||||||||    
T  1073341 cttctaaatcacccacaagcttgcaaacc-agattaaatacataaaagaacaccttgattttgcaagacctgaggaagtaccaaactaaagaaaatgatc 1073439  T
Q  183 cacaatggttgatggatccgctaaatgaaca 213  Q
    |||||| ||||| |||||  || ||||||||    
T  1073440 cacaattgttgaaggatcttctgaatgaaca 1073470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 12656976 - 12656852
Alignment:
Q  63 aaaagcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggta 162  Q
    ||||| ||||||||| ||| ||||||||||| ||||||||| ||||| ||| ||||||  |||||||||| || |||||||  ||| || |||||| |||    
T  12656976 aaaagtctaacatttcttttcttccaaatcatccaagaactagcaaa-ccaaatcaaatgcatgaaagaatacattgatttagcataacatgaagaagta 12656878  T
Q  163 ccaaactagagaaaatgatccacaat 188  Q
    |||||||   ||||||||||||||||    
T  12656877 ccaaactgatgaaaatgatccacaat 12656852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 1073549 - 1073655
Alignment:
Q  275 aacccacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaagtcaccaag 374  Q
    ||||||||| |  ||||||||| |||||| ||| |  ||||||| || || |||||||||||| |||| || ||||||||||| ||||| || | |||||    
T  1073549 aacccacaatctgtaacacacatctgagcatcacgctgaataattcccctacgaaataaattcaccttcgtaggcaatctattacgaaagagacgccaag 1073648  T
Q  375 caaaaac 381  Q
    |||||||    
T  1073649 caaaaac 1073655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 283 - 418
Target Start/End: Complemental strand, 11773673 - 11773538
Alignment:
Q  283 accactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaagtcaccaagcaaaaact 382  Q
    |||||||  |||||||||||  |||||||||||||||||||||| |||||||||| | |||| ||||||||||||||||||||| || |||||||| | |    
T  11773673 accactagtacacaactgagagtcatgtggaataatccctcttcaaaataaattcactttagatggcaatctattccgaaaaagacaacaagcaaacatt 11773574  T
Q  383 gaaaccttcagaggaacttccttcctccataggaga 418  Q
    || |||||||  || || |||||||||||| |||||    
T  11773573 gagaccttcaatgggacatccttcctccatgggaga 11773538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 29546339 - 29546260
Alignment:
Q  279 cacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattc 358  Q
    ||||||||| ||||||||| |||| ||||||||  ||  |||||||||| ||||||||| ||||||||||||||||||||    
T  29546339 cacaaccaccaacacacaaatgagactcatgtgatattttccctcttcggaataaattcaccttagttggcaatctattc 29546260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 278 - 418
Target Start/End: Complemental strand, 7320439 - 7320299
Alignment:
Q  278 ccacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaagtcaccaagcaa 377  Q
    ||||||||||||||||| || || || ||||| | |||||| ||||| |||||||||||  |  |||||||||||||||| || ||||| | ||||| ||    
T  7320439 ccacaaccactaacacaaaattgcgcttcatgagaaataatacctctccgaaataaattagctctagttggcaatctatttcggaaaagccgccaagaaa 7320340  T
Q  378 aaactgaaaccttcagaggaacttccttcctccataggaga 418  Q
    | ||| | ||||||| | |||  ||||||||||| ||||||    
T  7320339 acactaagaccttcacaagaatgtccttcctccaaaggaga 7320299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 41996631 - 41996524
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    |||||||||||| |||||| ||||||||||||| ||  || || ||||||||||||| ||||||||   ||||| ||| ||||||||| || ||||  ||    
T  41996631 aaaaggaaagaagtttaatcttctccaaaagcttaatgggagaattttctttgcctctgaaaagccggtcatttctttccttccaaattactcaagtgct 41996532  T
Q  104 tgcaaacc 111  Q
    ||||||||    
T  41996531 tgcaaacc 41996524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 25708194 - 25708120
Alignment:
Q  84 ttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagag 159  Q
    |||||||||||||||||||| ||||||  ||||| |||||||||||||||  ||||||||| | | ||||||||||    
T  25708194 ttccaaatcacccaagaactagcaaact-agatctaaaacatgaaagaacttcttgattttgcgtaacttgaagag 25708120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 29546559 - 29546502
Alignment:
Q  75 tttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaac 133  Q
    ||||||| |||| ||||||||||| |||| ||||| ||||||||| |||||||||||||    
T  29546559 tttatttccttctaaatcacccaaaaactagcaaa-ccagatcaataacatgaaagaac 29546502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 278 - 366
Target Start/End: Complemental strand, 27544782 - 27544694
Alignment:
Q  278 ccacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaag 366  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| | ||||||| |||||||||| |||||||    
T  27544782 ccacaaccactaacacacaactgagagccatgtggaataatccctcttcgaaataaattcgcattagttgacaatctattctgaaaaag 27544694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 47824888 - 47825083
Alignment:
Q  6 aaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaacttg 105  Q
    |||||||||| |||||||||||||||||||| || ||| | ||| ||||||   | ||||||| || |||||  || ||||||||||||||||||||| |    
T  47824888 aaggaaagaagtttaatattctccaaaagctgaagaggagggttatctttgaggcagaaaagcataccatttcattccttccaaatcacccaagaactag 47824987  T
Q  106 caaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactaga-gaaaatgatccacaatggttgatggatc 200  Q
    | || |  |   ||||||||||||||||||||||||||| ||| || ||||||  |||||||   || ||||||||||||||||||| ||||||||    
T  47824988 ctaatcaggtaaaaaaacatgaaagaacaccttgattttgcataacctgaagaattaccaaaaatgatgaaaatgatccacaatggtagatggatc 47825083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 31720358 - 31720174
Alignment:
Q  18 ttaatattctccaaa-agctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagat 116  Q
    ||||||||||||||| |||| ||  ||||| |  ||||| |||| ||| |||||| ||||| ||| ||| |||||||||||| |||||||||||| | ||    
T  31720358 ttaatattctccaaagagctgaacgggggaatggtctttacctctgaatagcctatcatttctttcctttcaaatcacccaataacttgcaaacc-atat 31720260  T
Q  117 caaaaacatgaaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggttgatggatccg 202  Q
    ||||| |||||| || | ||||||| || ||| || ||||||||| |||||||  ||||||| |||||||||||| || |||||||    
T  31720259 caaaatcatgaatgagcgccttgatgttgcataacatgaagaggtgccaaactgaagaaaataatccacaatggtagaaggatccg 31720174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 21839404 - 21839543
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    |||||||||||| |||||| ||||||||||||| |||||| || |||| |||||| || | || | |  ||||| ||| |||| ||||||| ||||||||    
T  21839404 aaaaggaaagaagtttaattttctccaaaagctgaaaaggagaattttgtttgccacgaataatcatgtcatttctttccttctaaatcactcaagaact 21839503  T
Q  104 tgcaaacccagatcaaaaacatgaaagaacaccttgatttt 144  Q
     ||||| ||||||||||||||||||||| | ||||||||||    
T  21839504 agcaaa-ccagatcaaaaacatgaaagagctccttgatttt 21839543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 599 - 688
Target Start/End: Original strand, 9084335 - 9084424
Alignment:
Q  599 ccttctcctcttccacgcctcccctccctcgttccaccccaaatcaaacatttgcgccacagttaacaatttcttttctgataaatcaaa 688  Q
    |||||||| ||||||||||||||||||||||| ||||||||  |  |||||||||||  || |||| ||||| ||||| || ||||||||    
T  9084335 ccttctccacttccacgcctcccctccctcgtcccaccccagctggaacatttgcgcagcaattaaaaatttattttcagacaaatcaaa 9084424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 27545137 - 27545030
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    ||||||||||||  |||||| |||||| ||| | || ||| || |||||| | || | |||||| ||| ||||| |||||||||||||||||||||| ||    
T  27545137 aaaaggaaagaagcttaatactctccacaagttgaataggagaattttctataccacagaaaagtctatcatttttttgcttccaaatcacccaagagct 27545038  T
Q  104 tgcaaacc 111  Q
     |||||||    
T  27545037 agcaaacc 27545030  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 3743904 - 3743748
Alignment:
Q  55 tgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttg 154  Q
    |||| |||||||||||  ||||| ||| |||||| |||| |||||| || ||||| | ||||||||  | ||||||||  |||||||||| |   || ||    
T  3743904 tgccacggaaaagcctgtcatttctttccttccatatcatccaagagctagcaaa-ctagatcaaatgcgtgaaagaaatccttgattttgcgaaacctg 3743806  T
Q  155 aagaggtaccaaactagagaaaatgatccacaatggttgatggatccgctaaatgaac 212  Q
    |||||||||||||||    ||||||||| |||||| | ||||||||| || |||||||    
T  3743805 aagaggtaccaaactgataaaaatgatctacaatgttggatggatccactgaatgaac 3743748  T

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Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 15107265 - 15107127
Alignment:
Q  4 aaaaggaaagaaatttaatattctccaaaagctaaaaaggggagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaact 103  Q
    |||| |||||||  |||||||||||||||| || || ||| || ||||||||||| || |||| |||| ||||| ||| ||||||||||| |||||||||    
T  15107265 aaaaagaaagaagcttaatattctccaaaaacttaataggagaattttctttgccacgaaaaatcctatcatttctttccttccaaatcatccaagaact 15107166  T
Q  104 tgcaaacccagatcaaaaacatgaaagaacaccttgattt 143  Q
     ||||| ||| ||||| ||||||||||| |||||||||||    
T  15107165 cgcaaa-ccaaatcaataacatgaaagagcaccttgattt 15107127  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 20757278 - 20757399
Alignment:
Q  62 gaaaagcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggt 161  Q
    |||||| ||| ||||| ||| |||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||| | ||| || | |||||||    
T  20757278 gaaaagtctatcatttctttccttccaaatcacccaagaactatcaaacc-agatcaaaaacatgaaagaacacattgattatgcataacctaaagaggt 20757376  T
Q  162 accaaactagagaaaatgatcca 184  Q
    |||||  |  |||||||||||||    
T  20757377 accaatttgaagaaaatgatcca 20757399  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 14362239 - 14362341
Alignment:
Q  312 gaataatccctcttcgaaataaattctccttagttggcaatctattcc-gaaaaagtcaccaagcaaaaactgaaaccttcagaggaacttccttcctcc 410  Q
    |||||||||||||||||||||||||   ||||| ||||||||||||||  |||||| ||||||||||| || ||||||||||  || || || |||||||    
T  14362239 gaataatccctcttcgaaataaattaatcttagatggcaatctattccaaaaaaagccaccaagcaaacaccgaaaccttcaaggggacatcattcctcc 14362338  T
Q  411 ata 413  Q
    |||    
T  14362339 ata 14362341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 17111526 - 17111457
Alignment:
Q  74 atttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgatttt 144  Q
    |||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||||| | ||||||||||    
T  17111526 atttatttccttccaaatcacccaagaactcgcaaa-caagatcaaaaacatgaaagagctccttgatttt 17111457  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 578 - 691
Target Start/End: Complemental strand, 10382722 - 10382610
Alignment:
Q  578 ctcctcccacacccataaccaccttctcctcttccacgcctcccctccctcgttccaccccaaatcaaacatttgcgccacagttaacaatttcttttct 677  Q
    |||||||||| ||||||  ||||  |||| ||| ||||||||||| || || | |||||| |||||||||||||||||||||||||| || || |||| |    
T  10382722 ctcctcccacgcccataggcaccgcctccactttcacgcctcccc-ccttcatcccaccctaaatcaaacatttgcgccacagttaaaaaattattttat 10382624  T
Q  678 gataaatcaaacaa 691  Q
    ||||| ||||||||    
T  10382623 gataattcaaacaa 10382610  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 15106993 - 15106893
Alignment:
Q  278 ccacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaaaaagtcaccaagcaa 377  Q
    |||||||||| |||||| ||||||| ||| || |  |||||||||||||  ||||||||| | |||||||||||| | |||| |||||| ||||||||||    
T  15106993 ccacaaccaccaacacataactgagactcctgagatataatccctcttcagaataaattccctttagttggcaatttgttccaaaaaagccaccaagcaa 15106894  T
Q  378 a 378  Q
    |    
T  15106893 a 15106893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 17111703 - 17111633
Alignment:
Q  73 catttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgatttt 144  Q
    |||| |||| ||||||||||||||||||||||||||| | |||| |||||||||||||| | ||||||||||    
T  17111703 cattcatttccttccaaatcacccaagaacttgcaaa-caagataaaaaacatgaaagagctccttgatttt 17111633  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 24954929 - 24955013
Alignment:
Q  278 ccacaaccactaacacacaactgagcctcatgtggaataatccctcttcgaaataaattctccttagttggcaatctattccgaa 362  Q
    |||||||||| ||||||||||||| |||| ||||  ||||| ||||  || ||||||||| ||||||| || |||||||| ||||    
T  24954929 ccacaaccaccaacacacaactgatcctcctgtgatataattcctcgccggaataaattcaccttagtaggtaatctatttcgaa 24955013  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 24954683 - 24954765
Alignment:
Q  48 ttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaaga 131  Q
    ||||||||||| || || | |||| ||||| ||| ||||||||||||||||||| | ||||| ||| ||||| |||||||||||    
T  24954683 ttttctttgccacgaaatatcctatcatttctttccttccaaatcacccaagaagtagcaaa-ccaaatcaataacatgaaaga 24954765  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 14362037 - 14362123
Alignment:
Q  127 aaagaacaccttgattttacatgacttgaagaggtaccaaactagagaaaatgatccacaatggttgatggatccgctaaatgaaca 213  Q
    ||||||||| |||||||  ||| || |||||| ||||||||||   ||||||||||||  | | | |||||||||||||||||||||    
T  14362037 aaagaacacattgatttggcataacctgaagaagtaccaaactgatgaaaatgatccaatacgttagatggatccgctaaatgaaca 14362123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 42128 - 42008
Alignment:
Q  66 agcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaacaccttgattttacatgacttgaagaggtacca 165  Q
    |||||| ||||| ||| |||||||||||| ||||||||||| |||| ||||||||| |||||| |||  ||||||| || ||| | ||||||||||||||    
T  42128 agcctatcatttctttccttccaaatcactcaagaacttgctaacc-agatcaaaatcatgaaggaaagccttgatgttgcataaattgaagaggtacca 42030  T
Q  166 aactagagaaaatgatccacaa 187  Q
    || |  ||||||||||||||||    
T  42029 aattgaagaaaatgatccacaa 42008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 523 - 694
Target Start/End: Complemental strand, 41652 - 41487
Alignment:
Q  523 caatatcaacctgcagcacaatggtcagcaataaagtctcacacttatctaacat---ctcctcccacacccataaccaccttctcctcttccacgcctc 619  Q
    |||||||||||||||||||||  |||||||||||||||  ||| | ||||| |||    ||||||||  ||||||| | |||||||| |||||| |||||    
T  41652 caatatcaacctgcagcacaacagtcagcaataaagtcctacattcatctaccatttcttcctcccatgcccataatctccttctccacttccaagcctc 41553  T
Q  620 ccctccctcgttccaccccaaatcaaacatttgcgccacagttaacaatttcttttctgataaatcaaacaaacg 694  Q
    |||         ||||||||||| ||||||||| |||| |||||  |||||  | ||||||||||||||||||||    
T  41552 ccc---------ccaccccaaattaaacatttgtgccatagttagaaatttactctctgataaatcaaacaaacg 41487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 41967 - 41810
Alignment:
Q  210 aacaagttgtcaaatatgaccaaataggccgcatgtcaagaacaaacgaacatttgattccttgcaacccacaaccactaacacacaactgagcctcatg 309  Q
    ||||||||||||||| ||||||||||| || ||||||||||| |||      | | ||||||  ||| ||||| ||||||||||| |||| || ||| ||    
T  41967 aacaagttgtcaaatctgaccaaatagaccacatgtcaagaataaattgttctctaattccta-caagccacacccactaacacaaaactaagactcgtg 41869  T
Q  310 tggaataat---ccctcttcgaaataaattctccttagttggcaatctattccgaaaaa 365  Q
     | ||||||   ||||||||| |||| |||  |||||||||||||||||||||||||||    
T  41868 agtaataataatccctcttcggaatacatttgccttagttggcaatctattccgaaaaa 41810  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 632 - 722
Target Start/End: Complemental strand, 30926703 - 30926613
Alignment:
Q  632 ccaccccaaatcaaacatttgcgccacagttaacaatttcttttctgataaatcaaacaaacgacgaaatctaactcaaagatggacatca 722  Q
    |||||| ||||||||| |||| |||  ||||||| |||| |||||||||||||||||||| ||||||| ||||||||||| | ||||||||    
T  30926703 ccaccctaaatcaaacgtttgtgcccaagttaactatttattttctgataaatcaaacaagcgacgaattctaactcaaaaagggacatca 30926613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 460678 - 460732
Alignment:
Q  270 cttgcaacccacaaccactaacacacaactgagcctcatgtggaataatccctct 324  Q
    ||||||| |||||||||  |||||| ||||||||||| |||| ||||||||||||    
T  460678 cttgcaaaccacaaccaggaacacataactgagcctcgtgtgaaataatccctct 460732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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