View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_high_40 (Length: 256)
Name: NF11117_high_40
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 31593799 - 31594024
Alignment:
| Q |
11 |
cacagaaacataatccaatcacctataacccttccaaaaagcatcaaacattaatcatttattcaattgaattatccacattttttaatgtgattactaa |
110 |
Q |
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| T |
31593799 |
cacataaacataatccaatcacctataacccttccaaaaagcatcaaacattaatcatttattcaattgaattatccacattttttaatgtgattaatca |
31593898 |
T |
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| Q |
111 |
gatgtggtggacctataacaaatgggtgtacatgtatgtattaattcaattcacattccaaactaaaagtatacaagctaaaatgggcgtatccaagaaa |
210 |
Q |
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| T |
31593899 |
gatgtggtggacctataacaaatgggtgtacatgtatgtatt-----aattcacattccaaactaaaagtatacaagctaaaatgggcgtatccaagaaa |
31593993 |
T |
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| Q |
211 |
tggttgggaatcgttcgaagaaaattcctaa |
241 |
Q |
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| T |
31593994 |
tggttgggaatcgttcgaagaaaattcctaa |
31594024 |
T |
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