View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11117_high_41 (Length: 254)

Name: NF11117_high_41
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11117_high_41
NF11117_high_41
[»] chr4 (4 HSPs)
chr4 (18-242)||(29676415-29676639)
chr4 (18-180)||(35968306-35968468)
chr4 (42-170)||(38863107-38863235)
chr4 (41-175)||(36636898-36637032)
[»] chr5 (2 HSPs)
chr5 (30-180)||(19658283-19658433)
chr5 (30-180)||(19675122-19675272)
[»] chr8 (1 HSPs)
chr8 (72-208)||(35335816-35335952)
[»] chr6 (1 HSPs)
chr6 (94-170)||(33844287-33844363)
[»] chr2 (2 HSPs)
chr2 (112-165)||(43864074-43864127)
chr2 (112-165)||(43875241-43875294)
[»] chr7 (1 HSPs)
chr7 (118-150)||(32413649-32413681)
[»] chr3 (1 HSPs)
chr3 (120-180)||(25596897-25596957)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 29676639 - 29676415
Alignment:
Q  18 aaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctct 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676639 aaaattttagagacgaatttggaaaattgtttaagagtggcaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctct 29676540  T
Q  118 tggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaaggcaatccgataagttgcttagcctgtcttcaccttc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29676539 tggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaaggcaatccgataagtcgcttagcctgtcttcaccttc 29676440  T
Q  218 tttgttttcttcctcacagtgcctt 242  Q
    |||||||||||||||||||||||||    
T  29676439 tttgttttcttcctcacagtgcctt 29676415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 35968468 - 35968306
Alignment:
Q  18 aaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctct 117  Q
    ||||| ||||| |||||  ||| |||||| ||  |||||| |||  ||||||| | ||| ||||||||||  ||| ||||||||||||||||  |||| |    
T  35968468 aaaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttt 35968369  T
Q  118 tggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 180  Q
    ||||||||| ||||||||||||||| ||||| | || ||| || ||||||||| |||| ||||    
T  35968368 tggacaaaacgcaagtttgaacgacctgttttgtatccaataatgacaaaatgtgaaggagaa 35968306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 38863107 - 38863235
Alignment:
Q  42 aattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacga 141  Q
    |||||||||| ||||| |||| ||||||  ||||| ||||||| ||| ||| ||||| |||||||||   |||||||||||||||  |||||| ||| |     
T  38863107 aattgtttaacagtggaaaatcttgaagaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatgg 38863206  T
Q  142 cgtgtttggcattcaaaaacgacaaaatg 170  Q
    | ||||||| ||||||  | |||||||||    
T  38863207 catgtttggtattcaacgatgacaaaatg 38863235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 36636898 - 36637032
Alignment:
Q  41 aaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacg 140  Q
    |||||| |||| ||||| |||| |||| || | ||| ||||||||||| ||| ||||||||||||||    ||||||| |||||||  ||||||   ||     
T  36636898 aaattgcttaacagtggaaaatcttgatgcatacaacataagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagttctgaca 36636997  T
Q  141 acgtgtttggcattcaaaaacgacaaaatgcgaag 175  Q
    || ||||||| ||||||||| ||||||||| ||||    
T  36636998 acatgtttggtattcaaaaatgacaaaatgtgaag 36637032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 19658283 - 19658433
Alignment:
Q  30 acgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgc 129  Q
    ||||||||||||||||| || ||||||| |||| | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  |    
T  19658283 acgaatttggaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacac 19658382  T
Q  130 aagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 180  Q
    ||||||||||| | | ||| || | |||||| ||||||||| |||| ||||    
T  19658383 aagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19658433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 19675122 - 19675272
Alignment:
Q  30 acgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgc 129  Q
    |||||||| |||||||| || ||||||| |||| | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  |    
T  19675122 acgaatttcgaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacac 19675221  T
Q  130 aagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 180  Q
    ||||||||||| | | ||| || | |||||| ||||||||| |||| ||||    
T  19675222 aagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19675272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 208
Target Start/End: Complemental strand, 35335952 - 35335816
Alignment:
Q  72 tgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgc 171  Q
    ||||| ||||| ||||| ||| ||||||| |||||||   |||| |||||||||| |||||||||||| || ||||||| ||  || || |||||||||     
T  35335952 tgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatgt 35335853  T
Q  172 gaagtagaaggcaatccgataagttgcttagcctgtc 208  Q
    ||||||||| |||||| | |||||  |||| ||||||    
T  35335852 gaagtagaatgcaatcaggtaagtcacttatcctgtc 35335816  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 33844287 - 33844363
Alignment:
Q  94 gtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatg 170  Q
    |||||||||||||||   ||||  ||||||||||||||||||||||| ||| || ||  |||||||| |||||||||    
T  33844287 gtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatg 33844363  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 43864074 - 43864127
Alignment:
Q  112 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 165  Q
    |||| |||||||||||||||||||||||| | | ||| ||||||||||| ||||    
T  43864074 atcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggaca 43864127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 43875241 - 43875294
Alignment:
Q  112 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 165  Q
    |||| |||||||||||||||||||||||||| | ||| ||||| ||||| ||||    
T  43875241 atcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggaca 43875294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 32413681 - 32413649
Alignment:
Q  118 tggacaaaatgcaagtttgaacgacgtgtttgg 150  Q
    ||||||||||||||||||||||| |||||||||    
T  32413681 tggacaaaatgcaagtttgaacggcgtgtttgg 32413649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 25596957 - 25596897
Alignment:
Q  120 gacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 180  Q
    ||||||||||||||||||||| | |  |||| ||||||||| ||||||||| |||| ||||    
T  25596957 gacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaa 25596897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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