View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_high_44 (Length: 251)
Name: NF11117_high_44
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_high_44 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 29638292 - 29638472
Alignment:
| Q |
71 |
aataataataattacttaaaagataaaccattataaatgtaagcattcatgaccttgaggatttgggagtattttttaaacgatatttaggaagccaaaa |
170 |
Q |
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| T |
29638292 |
aataataataattacttaaaagataaaccattataaatgtaagcattcaagaccttgaggatttgggagtattttttaaacgatatttaggaagccaaaa |
29638391 |
T |
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| Q |
171 |
ggttttatacccactaaggttcatatgaaacgatgcgatcccttttctcccggtggagtttaattctataattcaaagtgc |
251 |
Q |
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| T |
29638392 |
ggttttatacccactaaggttcatatgaaacgatacgaccccttttctcccggtggagtttaattctataattcaaagtgc |
29638472 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 29635796 - 29635874
Alignment:
| Q |
111 |
aagcattcatgaccttgaggatttgggagtattttttaaacgatatttaggaagccaaaaggttttatacccactaagg |
189 |
Q |
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| T |
29635796 |
aagcattgatgtccttcagaatttgggagtattatttaaacgatatttaggaagccaaaaggttttatacccactaagg |
29635874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 29638193 - 29638253
Alignment:
| Q |
14 |
aggctcgtgtcgattggcctaactatttccacatatagtgaagagagaagtataaacaata |
74 |
Q |
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| T |
29638193 |
aggctcgtgtcggttggcctaactatttccacatatagtgaagagagaagtataaacaata |
29638253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 29636026 - 29636079
Alignment:
| Q |
198 |
aaacgatgcgatcccttttctcccggtggagtttaattctataattcaaagtgc |
251 |
Q |
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| T |
29636026 |
aaacgatgcgaccccttttctcccggtggagtttaattctctaattcaaagtgc |
29636079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 29646289 - 29646350
Alignment:
| Q |
147 |
taaacgatatttaggaagcc-aaaaggttttatacccactaaggttcatatgaaacgatgcga |
208 |
Q |
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| T |
29646289 |
taaacgatatttaggaagccaaaaaggttttata-ccactaaggtttatatgaaacgatgcga |
29646350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 29635647 - 29635688
Alignment:
| Q |
14 |
aggctcgtgtcgattggcct-aactatttccacatatagtga |
54 |
Q |
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| T |
29635647 |
aggctcgtgtcggttggccttaactatttccacatatagtga |
29635688 |
T |
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