View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_high_50 (Length: 241)
Name: NF11117_high_50
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_high_50 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 43260813 - 43260573
Alignment:
| Q |
1 |
agactaagaatgaaaatgtgaaataacagttgtgaccttttatatttgaaagatggagcattcccgaagaagttgaggaaaatggtttgaagatgaggac |
100 |
Q |
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| T |
43260813 |
agactaagaatgaaaatgtgaaataacagttgtgaccttttatatttgaaagatggagcattcccaaagaagttgaggaaaatggtttgaagatgaggac |
43260714 |
T |
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| Q |
101 |
tggaaagccatggtgtaacagaatatccaccttgaagaattggacactttgaaacgacggcgtcgtagatttgggaacaagagttgtaactgaactcagc |
200 |
Q |
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| T |
43260713 |
tggaaagccatggtgtaacagaatatccgccttgaagaattggacactttgaaacgacggcgtcgtagatttgggaacaagagttgtaactgaactcagc |
43260614 |
T |
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| Q |
201 |
tggagagcatgagaatccagagaagagatcttgaaggaaat |
241 |
Q |
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| T |
43260613 |
tggagagcatgagaatccagagaagagatcttgaaggaaat |
43260573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 43270960 - 43270819
Alignment:
| Q |
29 |
gttgtgaccttttatatttgaaagatggagcattcccgaagaagttgaggaaaatggtttgaagatgaggactggaaagccatggtgtaacagaatatcc |
128 |
Q |
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| T |
43270960 |
gttgtgaccttttgtatttaaaagtaggaggatttccgaagaagttaagaaaaacagtttgaagatgaggactagaaagccaaggcgtgacggagtatct |
43270861 |
T |
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| Q |
129 |
accttgaagaattggacactttgaaacgacggcgtcgtagat |
170 |
Q |
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| T |
43270860 |
gccgtgaagaatccggcacttagaaacgacggcatcgtagat |
43270819 |
T |
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