View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_low_1 (Length: 1035)
Name: NF11117_low_1
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 879; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 879; E-Value: 0
Query Start/End: Original strand, 23 - 1019
Target Start/End: Original strand, 30407775 - 30408772
Alignment:
| Q |
23 |
caatccaagagttctttgttcttgaattagttttatgttcatggcttgctgctttagtgcaagggtcaaagttgaaaatcctacacataatggtatggct |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30407775 |
caatccaaaagttctttgttcttgaattagttttatgttcatggcttgctgctttagtgcaagggtcaaagttgaaaatcctacacataatggtatggct |
30407874 |
T |
|
| Q |
123 |
aatgttattctattttccccttttttatttgttaactttcttaatttgttcagttggtatctgagctctannnnnnnnn-aacaaactagttttgagctc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
30407875 |
aatgttattctattttccccttttttatttgttaactttcttaatttgttcagttggtatctgagctctattttttttttaacaaacgagttttgagctc |
30407974 |
T |
|
| Q |
222 |
aattttcttaaagatannnnnnnnaatacacgaaaagaccaannnnnnnnaattgtattgaaaatattggtagaaaaatagttgccagaatattgcataa |
321 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30407975 |
aattttcttaaagatcttttttttaatacaccaaaagaccaattttttttaattgtattgaaaatattggtagaaaaatagttgccagaatattgcataa |
30408074 |
T |
|
| Q |
322 |
aagttagttcatgtttctattatgacatggacaggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggtttgagcaacaaggtatcct |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408075 |
aagttagttcatgtttctattatgacatggactggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggtttgagcaacaaggtatcct |
30408174 |
T |
|
| Q |
422 |
cttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaa |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408175 |
cttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaa |
30408274 |
T |
|
| Q |
522 |
ctttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggt |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30408275 |
ctttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacatgcaagctcctacgaaaccaggtactggt |
30408374 |
T |
|
| Q |
622 |
tttgttgttgctgtgatgatgtttaacaatgaaagcaaccaggaacatagtgaatggttggtgagtgtcgcttacttttattttgaagttcggaaatatc |
721 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408375 |
tttgttgttgctgtgatgatgtttaacaatgaaagcaaccaggaacatagtgaatggttggtgagtgtcgcttacttttattttgaagttcggaaatatc |
30408474 |
T |
|
| Q |
722 |
aaattagtttatgaaccttgttttttgtggaaaattaaatagatggtgacaaatgagaattttgattttgactatgatgagactaattaaaccttgtact |
821 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30408475 |
aaattagtttatgaaccttgttttttgtggaaaattaaatagatggtgacaaatgagaattttgattttgactatgatgagaataattaaaccttgtact |
30408574 |
T |
|
| Q |
822 |
tcaggcaaaaatcaattaccttgggcagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagggttcctatcggattttagtatatgaa |
921 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408575 |
tcaggcaaaaatcaattaccttgggcagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagggttcctatcggattttagtatatgaa |
30408674 |
T |
|
| Q |
922 |
ttcatgaccaaaggaaatttggataatcatttgtttagaagtatgttgttaattaacctccttttataattgtcttttttatataatgagtttttatt |
1019 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408675 |
tttgtgaccaaaggaaatttggataatcatttgtttagaagtatgttgttaattaacctccttttataattgtcttttttatataatgagtttttatt |
30408772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 276 - 690
Target Start/End: Original strand, 30410959 - 30411370
Alignment:
| Q |
276 |
gtattgaaaatattggtagaaaaatagttgccagaatattgcataaaagttagttcatgtttctattatgacatggacaggtttgaattcagaggttgtt |
375 |
Q |
| |
|
||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
30410959 |
gtattgacactattggtagaaaaatagttggcagaatatggcataaaagttagttcatttttctattatgatatgg------ttgaattcaaaggttgtt |
30411052 |
T |
|
| Q |
376 |
ggaagagaagaggttgtttcgggtggtttgagcaacaaggtatcctcttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaaca |
475 |
Q |
| |
|
||||| ||||||| ||||| | ||||||| |||||||||| |||||||||| |||| || |||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
30411053 |
ggaagggaagaggatgttttgagtggtttaagcaacaaggcatcctcttcatctgtgcttctaacttcaaagactgagggtgagatattacaatgcaaca |
30411152 |
T |
|
| Q |
476 |
atttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggg |
575 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || | ||||||||||||| ||| || | ||||||||||| |||||||| || || ||||| |
|
|
| T |
30411153 |
atttgaagtgtttcacattcaatgagctaaaaactgctacgacgtactttcatccaagcggtcaagtggatgaacgtgggtttggtagtgtctttaaggg |
30411252 |
T |
|
| Q |
576 |
gtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaatgaaagcaacca---ggaacatagt |
672 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||| | |||||||| ||| ||||||| ||| || ||| | | |
|
|
| T |
30411253 |
gtggatcgatgagcacacgctagctcctactaaacaaggtactggttatgttgttgctgttaagatgtttatcaaagaaagcagccaactgggacagaat |
30411352 |
T |
|
| Q |
673 |
gaatggttggtgagtgtc |
690 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30411353 |
gaatggttggtgagtgtc |
30411370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 352 - 687
Target Start/End: Original strand, 30421143 - 30421478
Alignment:
| Q |
352 |
acaggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggtttgagcaacaaggtatcctcttcaactgttctgctaacttcaaggactg |
451 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||| ||||||| ||||||| || | | || || |||||| |||| || |||| || ||||| | |
|
|
| T |
30421143 |
acaggtttgaattcaaaggttgttgggagagaggaggatgtttcgagtggtttaagtagaagggcctcttcttcatctgtgcttctaagctctaggaccg |
30421242 |
T |
|
| Q |
452 |
agggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacg |
551 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||||||||||| |||||||||||| | | |||||||| ||||||| |||| | || | | ||| | |
|
|
| T |
30421243 |
agggtgagatattgcaatcaaactatttgaagtgtttcactatcaatgaggtaagagccgcgacaaggaactttcgtccagatagtatgattggcgaagg |
30421342 |
T |
|
| Q |
552 |
tggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaat |
651 |
Q |
| |
|
|||||||||| | ||||| ||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||| | || | ||||| | |
|
|
| T |
30421343 |
tggatttggttgtgtatttaagggttggatcgatgagcacacactagctcctactaaaccaggtactggttttgttattgctgtcaagaggcttaaccaa |
30421442 |
T |
|
| Q |
652 |
gaaagcaaccaggaacatagtgaatggttggtgagt |
687 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| |
|
|
| T |
30421443 |
gaaagcagtcagggacatagtgaatggttggtgagt |
30421478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 30410598 - 30410726
Alignment:
| Q |
14 |
gaagaggtccaatccaagagttctttgttcttgaattagttttatgttcatggcttgctgctttagtgcaagggtcaaagttgaaaatcctacacataat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||| |
|
|
| T |
30410598 |
gaagaggtccaatccaagagttctttgttcttgaattagttttatgttcatggcttgctgctttagaggaagggtcaaagttgagagtcctacacataat |
30410697 |
T |
|
| Q |
114 |
ggtatggctaatgttattctattttcccc |
142 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
30410698 |
ggtatcattaatgttattctattttcccc |
30410726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 796 - 974
Target Start/End: Original strand, 30411448 - 30411626
Alignment:
| Q |
796 |
tgatgagactaattaaaccttgtacttcaggcaaaaatcaattaccttgggcagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagg |
895 |
Q |
| |
|
||||||||||||||||||||| || || ||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30411448 |
tgatgagactaattaaaccttatattttaggcagaaatcaattatcttgggcagctgcatcatcctaatctcgtgaaactgattggttactgattagagg |
30411547 |
T |
|
| Q |
896 |
gttcctatcggattttagtatatgaattcatgaccaaaggaaatttggataatcatttgtttagaagtatgttgttaat |
974 |
Q |
| |
|
| ||| || ||||| || || ||||| || || | |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30411548 |
atagctaccgaatttttgtgtacgaatttttggccgagggaagtttggataatcatttgtttagaagtatgttgttaat |
30411626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 339 - 736
Target Start/End: Original strand, 30404272 - 30404670
Alignment:
| Q |
339 |
tattatgacatggacaggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggtttgagcaacaaggtatcctcttcaactgttctgcta |
438 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||||||| |||||| ||||||| ||| |||| | | |||||||| ||| | ||| |
|
|
| T |
30404272 |
tattctgacatggacaggtttgaatttgatagttgttgggagagaagaggaagtttcgagtggtttaagctacaaagcagcctcttcatttgtgcctcta |
30404371 |
T |
|
| Q |
439 |
acttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaactttcatccaagtggtg |
538 |
Q |
| |
|
||||| |||||||||| |||| |||| | |||||||||||||| ||||||||| |||| ||||||| | | || ||||| |||||||||||| | || |
|
|
| T |
30404372 |
acttctaggactgaggatgaggtattgcgatccaacaatttgacgtgtttcactatcaacgaggtaagagccgcaacaaggaactttcatccagatagta |
30404471 |
T |
|
| Q |
539 |
aactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgat |
638 |
Q |
| |
|
| | || ||||||||||| | ||||| ||||| ||||||||||||||||| | ||| || || |||| |||||||||||||| ||| |||||| |
|
|
| T |
30404472 |
tgattggcaaaggtggatttggttgtgtatttaagggttggatcgatgagcacacactagccccgactaaacaaggtactggttttgccgtttctgtgaa |
30404571 |
T |
|
| Q |
639 |
gatgtttaacaatgaaagcaaccaggaacatagtgaatggttggtgagtgtcgcttacttttattttgaagttcgg-aaatatcaaattagtttatgaa |
736 |
Q |
| |
|
|| | | ||| || ||||||| |||| |||||||||||||||||| |||||| ||| ||| ||||||||| || ||||| |||||||||||||||| |
|
|
| T |
30404572 |
gaggctcaacgataaaagcaatcagggacatagtgaatggttggtaagtgtcatttaatttctgtttgaagttaggaaaataacaaattagtttatgaa |
30404670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 830 - 973
Target Start/End: Original strand, 30421791 - 30421934
Alignment:
| Q |
830 |
aaatcaattaccttgggcagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagggttcctatcggattttagtatatgaattcatgac |
929 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||| ||||||||||| |||||||||||||||| | ||| |||||||| ||||||||||| |||| |
|
|
| T |
30421791 |
aaatcaattaccttggacagctgcatcatccaaatctagtgaaactgataggttactgcttagaggatgactaccggattttggtatatgaatttgtgac |
30421890 |
T |
|
| Q |
930 |
caaaggaaatttggataatcatttgtttagaagtatgttgttaa |
973 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
30421891 |
caagggaagtttggataatcatttgtttagaagtatgttattaa |
30421934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 30404035 - 30404175
Alignment:
| Q |
14 |
gaagaggtccaatccaagagttctttgttcttgaattagttttatgttcatggcttgctgctttagtgcaagggtcaaagttgaaaatcctacacataat |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||| | | ||| ||||||| |
|
|
| T |
30404035 |
gaaggggtccaatccaagagttctttgttcttgaattacttctatgttcatggcttgctgcttt------agggtcaaagttgagacttctaaacataat |
30404128 |
T |
|
| Q |
114 |
ggtatggctaatgttattctattttccccttttttatttgttaactt |
160 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
30404129 |
ggtatcattaatgttattctatattccccttttttattttttaactt |
30404175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 571 - 687
Target Start/End: Original strand, 30401136 - 30401252
Alignment:
| Q |
571 |
aaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaatgaaagcaaccaggaacata |
670 |
Q |
| |
|
|||||||||||||||||||||||| || || || ||||||||| ||||||| ||||||||||| || | ||||||||| ||| ||||||||| | |
|
|
| T |
30401136 |
aaggggtggatcgatgagcacacgttaggccccactaaaccaggttctggtttgactgttgctgtgaagaagcttaacaatgcgagccaccaggaaccca |
30401235 |
T |
|
| Q |
671 |
gtgaatggttggtgagt |
687 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30401236 |
gtgaatggttggtgagt |
30401252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 830 - 1001
Target Start/End: Original strand, 30404720 - 30404890
Alignment:
| Q |
830 |
aaatcaattaccttgggcagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagggttcctatcggattttagtatatgaattcatgac |
929 |
Q |
| |
|
|||||||||| || || ||||||| |||||||||||| |||||| |||||||||| ||| |||||| | | ||||||| ||||||||||| | || |
|
|
| T |
30404720 |
aaatcaattatctgggacagctgcatcatcctaatcttgtgaaattgattggttattgcatagaggatgaatgctggattttggtatatgaatttcttac |
30404819 |
T |
|
| Q |
930 |
caaaggaaatttggataatcatttgtttagaagtatgttgttaattaacctccttttataattgtctttttt |
1001 |
Q |
| |
|
||| |||| ||| ||||||| |||||||| ||||||| | |||||| ||||||| ||| ||||||| |||| |
|
|
| T |
30404820 |
caagggaagtttagataatcttttgtttaaaagtatg-tattaattttcctccttctattattgtctctttt |
30404890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 844 - 893
Target Start/End: Original strand, 30388899 - 30388948
Alignment:
| Q |
844 |
gggcagctgcgtcatcctaatctcgtgaaactgattggttactgcttaga |
893 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
30388899 |
gggcagctgagtcatcctaatcttgtgagactgattggttactgcttaga |
30388948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 848 - 895
Target Start/End: Original strand, 30401416 - 30401463
Alignment:
| Q |
848 |
agctgcgtcatcctaatctcgtgaaactgattggttactgcttagagg |
895 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
30401416 |
agctgtgtcatcctaatcttgtgagactgattggttactgcttagagg |
30401463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 30420304 - 30420358
Alignment:
| Q |
63 |
atggcttgctgctttagtgcaagggtcaaagttgaaaatcctacacataatggta |
117 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||| | ||||||||||||||||| |
|
|
| T |
30420304 |
atgggttgctgctttagtgcaaaggtcaaagctgagagtcctacacataatggta |
30420358 |
T |
|
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Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 827 - 895
Target Start/End: Original strand, 31445278 - 31445346
Alignment:
| Q |
827 |
caaaaatcaattaccttgggcagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagg |
895 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
31445278 |
caaaaatcaatgacctggaccagctgcgtcatcctaatcttgtcaaactgattggttactgcttagagg |
31445346 |
T |
|
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Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 830 - 890
Target Start/End: Original strand, 34150088 - 34150148
Alignment:
| Q |
830 |
aaatcaattaccttgggcagctgcgtcatcctaatctcgtgaaactgattggttactgctt |
890 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
34150088 |
aaatcaattacctgggacagctgcatcatcctaatcttgtgaaactgatcggttactgctt |
34150148 |
T |
|
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