View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_10 (Length: 573)
Name: NF11117_low_10
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 153 - 559
Target Start/End: Complemental strand, 48444798 - 48444384
Alignment:
| Q |
153 |
ttgaattattaatttaattggtgagaaggccaaatgtgcggttgcatgaagcaggtgatgccatttgccgccacattctctgcgctagtggcggctgccg |
252 |
Q |
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| T |
48444798 |
ttgaattattaatttaattggtgagaaggccaaatgtgcggttgcatgaagcaggtgatgccatttgccgccacattctctgcgctagtggcggctgccg |
48444699 |
T |
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| Q |
253 |
tgtccttcagg--------tgatgccatgctgttttctccttttgttgtcatacacgttcctttctttgttgaaccaaaaccaatactctgtgtgttgat |
344 |
Q |
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| T |
48444698 |
tgtccttcaggagttcaggtgatgccatgctgttttctccttttgttgtcatacacgttcctttctttgttgaaccaaaaccaatactctgtgtgttgat |
48444599 |
T |
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| Q |
345 |
acgtgtcggagtggtagaaaggaggggaaaaagacagcagaaattcaacaaggaattgtgttttgttagtaaaatcccaatatgaacgaaacgcatatat |
444 |
Q |
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| T |
48444598 |
acgtgtcggagtggtagaaaggaggggaaaaagacagcagaaattcaacaaggaattgtgttttgttagtaaaatcccaatatgaacgaaacgcatatat |
48444499 |
T |
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| Q |
445 |
ttaagcttgctgagtgtagtcacaaatggaggatggaaaataatgacaacacaaatgatactatcttcnnnnnnnngacacaaacacaaattatatattg |
544 |
Q |
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| T |
48444498 |
ttaagcttgctgagtgtagtcacaaatggaggatggaaaataatgacaacacaaatgatactatcttcttttttttgacacaaacacaaattatatattg |
48444399 |
T |
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| Q |
545 |
gaccatatacattct |
559 |
Q |
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| T |
48444398 |
gaccatatacattct |
48444384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 48444937 - 48444853
Alignment:
| Q |
14 |
agacgcaacacaaaacataacgcctccattgttggttggattagatgaaaattaaggaagggcattttggaccgcatatcaattc |
98 |
Q |
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| T |
48444937 |
agacacaacacaaaacataacgcctccattgttggttggattagatgaaaattaaggaagggcattttggaccgcatatcaattc |
48444853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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