View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_low_11 (Length: 563)
Name: NF11117_low_11
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 22 - 523
Target Start/End: Original strand, 49137427 - 49137926
Alignment:
| Q |
22 |
caataatctatattattttatttttagcaaaatagttcagatcctaatgatcaagctgaaacatatagtgttgtcagtcccttgctccttttcacattgt |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49137427 |
caataatctatattattttctttttagcaaaatagttcagatcctaatgatcaagctgaaacatatagtgttgtcggtcccttgctccttttcacattgt |
49137526 |
T |
|
| Q |
122 |
ggggtgtttgatcttctatatatgaatatctataataaacaattcattttatagcatcaagtggataatatcaactattaattaacaaattaataataaa |
221 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49137527 |
ggg-tgtttgatcttctatatatgaatatctaaaataaacaattcattttatagcgtcaagtggataatatcaactattaattaacaaattaataataaa |
49137625 |
T |
|
| Q |
222 |
tattgtaggtgcattatagcaaatcgcaagtttgtaaaaataacaagctttaatttttctcactttacattttagtcacttcagaggaacgttaacacga |
321 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| | ||||||||||| ||||||||||||| |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
49137626 |
tattgtaggtgcattatagcaaatcacgagtttattaaaataacaagttttaatttttctc--tttacattttagtcacttcaaaggatcgttaacacga |
49137723 |
T |
|
| Q |
322 |
ttgtgaaggcatttataagattt-ataaacaaatcatgggctaagattagtgaccatgttcctcatgtcctttttaaatttatttttctaaaaatgtctg |
420 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| ||| |
|
|
| T |
49137724 |
ttgtgaaggcatttataagattttataaacaaatcatgggctaagattagtgaccatgttcctcatgtcgtttttaattttatttttctagaaatgcctg |
49137823 |
T |
|
| Q |
421 |
ctgacccttacattgtttcaacgaataagtattttattgtctattcattttacttgagctgttttcagcaaatatttcatcggttgttggttggcatatg |
520 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49137824 |
ctgacacttacattgtttcaacgaataagtattttattgtttattcattttacttgagctgttttcagcaaatatttcatcggttgttggttggcatatg |
49137923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 9824494 - 9824552
Alignment:
| Q |
188 |
aatatcaactattaattaacaaattaataataaatattgtaggtgcattatagcaaatc |
246 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||| ||| ||||| ||| |||||| |
|
|
| T |
9824494 |
aatatcaactattaattaacaaattgaaaatagatattatagatgcataataacaaatc |
9824552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 5736502 - 5736468
Alignment:
| Q |
180 |
aagtggataatatcaactattaattaacaaattaa |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5736502 |
aagtggacaatatcaactattaattaacaaattaa |
5736468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University