View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_low_13 (Length: 505)
Name: NF11117_low_13
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 43025062 - 43025526
Alignment:
| Q |
18 |
gaactctcttctgtcaccgtatgatttgaaaattttaattatgttgaattaaatatcaaccatgaaatacatataatatgcatgagcacgatattgcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025062 |
gaactctcttctgtcaccgtatgatttgaaaattttaattatgttgaactaaatatcaaccatgaaatacatataatatgcatgagcacgatattgcaaa |
43025161 |
T |
|
| Q |
118 |
gacgaacactcagaacactcagaacttctataggacagacacctctaatcaaaggtgacagtgtcactacgctatctgacaccgattacattcgattaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025162 |
gacgaacactcagaacactcagaacttctataggacagacacctctaatcaaaggtgacagtgtcactacgctatctgacaccgattacattcgattaat |
43025261 |
T |
|
| Q |
218 |
tcattttctctcaacttaaaactcagtttacaatcaagcatcaaatataaaccctaatcgagtcgattaattcattttctcnnnnnnntattaagaaccc |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43025262 |
tcatgttctctcaacttaaaactcagtttacaatcaagcatcaaatataaaccctaatcgagtcgattaattcattttctcaaaaaaatattaagaaccc |
43025361 |
T |
|
| Q |
318 |
taatcaagaaaatcaataaatcctagtacagtaacgatgaaaacagttaaaaacgatcaagattaagaaccgaccttcattggtctgagcgttggtgacc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025362 |
taatcaagaaaatcaataaatcctagtacagtaacgatgaaaacagttaaaaacgatcaagattaagaaccgaccttcattggtctgagcgttggtgacc |
43025461 |
T |
|
| Q |
418 |
agaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc |
482 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025462 |
agaaggtcaaaatcagtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc |
43025526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 313 - 482
Target Start/End: Original strand, 35064091 - 35064270
Alignment:
| Q |
313 |
aaccctaatcaagaaaatcaataaatcctagtaca-----gtaacgatgaaaacagttaa-----aaacgatcaagattaagaaccgaccttcattggtc |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
35064091 |
aaccctaatcaagaaaatcaataaatcctagtatacaaccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtc |
35064190 |
T |
|
| Q |
403 |
tgagcgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc |
482 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35064191 |
tgagcgttagtaaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgtacc |
35064270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 381 - 482
Target Start/End: Original strand, 42815210 - 42815311
Alignment:
| Q |
381 |
taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgta |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42815210 |
taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcagtaccccttcctaaatgcttggatacaaatatactttgtttcaatgta |
42815309 |
T |
|
| Q |
481 |
cc |
482 |
Q |
| |
|
|| |
|
|
| T |
42815310 |
cc |
42815311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 35063718 - 35063813
Alignment:
| Q |
129 |
agaacactcagaacttctataggacagacacctctaatcaaaggtgacagtgtc-actacgctatctgacaccgattacattcgattaattcattt |
223 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
35063718 |
agaacacccagaacatctatagcacagacacctctaatcaaaggtgacagtgtctactacactatctgacacggattatattcggttaattcattt |
35063813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 35063853 - 35063903
Alignment:
| Q |
229 |
caacttaaaactcagtttacaatcaagcatcaaatataaaccctaatcgag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35063853 |
caacttaaaactcagtttacaatcaagcatcagatataaaccctaatcgag |
35063903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 42814804 - 42814859
Alignment:
| Q |
128 |
cagaacactcagaacttctataggacagaca-cctctaatcaaaggtgacagtgtc |
182 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
42814804 |
cagaacactcagaacttctatagcacagacaccctctaatcaaaggtgccagtgtc |
42814859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 42814700 - 42814747
Alignment:
| Q |
18 |
gaactctcttctgtcaccgtatgatttgaaaattttaattatgttgaa |
65 |
Q |
| |
|
|||||| |||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
42814700 |
gaactcccttccatcacagtatgatttgaaaattttaattatgttgaa |
42814747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 42815062 - 42815109
Alignment:
| Q |
230 |
aacttaaaactcagtttacaa-tcaagcatcaaatataaaccctaatc |
276 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
42815062 |
aacttaaaacttagtttacaaattaagcatcaaatataaaccctaatc |
42815109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University