View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_14 (Length: 490)
Name: NF11117_low_14
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 37752824 - 37753286
Alignment:
| Q |
18 |
aaggagaggaggtggtgaagagagcactatctactagttggtggcaattttcttaattaataactttggttcacctgttaaaaattcgtaacctaaaagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37752824 |
aaggagaggaggtggtgaagagagcactatctactagttggtggcaattttcttaattaataactttggttcaccggttaaaaattcgtaacctaaaagt |
37752923 |
T |
|
| Q |
118 |
ggatccaaatctcatatgttcctcttaatggagtatattctatatcatctaactttttatagtttctactttctgtacatatttgaatcatggacaaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37752924 |
ggatccaaatctcatatgttcctcttaatggagtatattctatatcatctaactttttatagtttctactttctgtacatatttgaatcatggacaaaaa |
37753023 |
T |
|
| Q |
218 |
cataattatgaaaattaatgagcacaaataagttaaatctct-aaaagaagttcgcaaaatgattgttaatgttaccttaagtaatactccctttagtgg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37753024 |
cataattatgaaaattaatgagcacaaataagttaaatccctaaaaaaaagttcgcaaaatgattgttaatgttaccttaagtaatactccctttagtgg |
37753123 |
T |
|
| Q |
317 |
agactagctagctcctatcgtcagattcaacctttgttgtttnnnnnnnngattggtttgaaggaatacaagatgcttacatcgaaaaataagtgaattc |
416 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37753124 |
agactagctagctcctatcgttagattcaacctttgttggttaaaaaaaagattggtttgaaggaatacaagatgcttacatcgaaaaataagtgaattc |
37753223 |
T |
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| Q |
417 |
ttgtgtgctttttagattagaaaaaatgtgaaactcggtttaatctaagtaaagatcctctctg |
480 |
Q |
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| T |
37753224 |
ttgtgtgc-ttttagattagaaaaaatgtgaaactcggtttaatctaagtaaagatcctctctg |
37753286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 37741904 - 37741845
Alignment:
| Q |
18 |
aaggagaggaggtggtgaagagagcactatctactagttggtggcaattttcttaattaa |
77 |
Q |
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|||| |||||||| |||| ||| |||| |||||| |||||||| |||||||||||||||| |
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| T |
37741904 |
aaggggaggaggtagtgaggagggcaccatctacaagttggtgacaattttcttaattaa |
37741845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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