View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11117_low_2 (Length: 870)

Name: NF11117_low_2
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11117_low_2
NF11117_low_2
[»] chr3 (12 HSPs)
chr3 (1-870)||(30407832-30408702)
chr3 (260-674)||(30410959-30411370)
chr3 (263-598)||(30421143-30421478)
chr3 (214-611)||(30404272-30404670)
chr3 (55-154)||(30411448-30411547)
chr3 (1-120)||(30421791-30421910)
chr3 (263-379)||(30401136-30401252)
chr3 (790-866)||(30404099-30404175)
chr3 (808-867)||(30410667-30410726)
chr3 (57-106)||(30388899-30388948)
chr3 (55-102)||(30401416-30401463)
chr3 (55-120)||(30404720-30404785)
[»] chr2 (1 HSPs)
chr2 (55-123)||(31445278-31445346)
[»] chr5 (1 HSPs)
chr5 (60-120)||(34150088-34150148)


Alignment Details
Target: chr3 (Bit Score: 756; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 1 - 870
Target Start/End: Complemental strand, 30408702 - 30407832
Alignment:
Q  1 gattatccaaatttcctttggtcatgaattcatatactaaaatccgataggaaccctctaagcagtaaccaatcagtttcacgagattaggatgacgcag 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408702 gattatccaaatttcctttggtcacaaattcatatactaaaatccgataggaaccctctaagcagtaaccaatcagtttcacgagattaggatgacgcag 30408603  T
Q  101 ctgcccaaggtaattgatttttgcctgaagtacaaggtttaattagtctcatcatagtcaaaatcaaaattctcatttgtcaccatctatttaattttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408602 ctgcccaaggtaattgatttttgcctgaagtacaaggtttaattattctcatcatagtcaaaatcaaaattctcatttgtcaccatctatttaattttcc 30408503  T
Q  201 acaaaaaacaaggttcataaactaatttgatatttccgaacttcaaaataaaagtaagcgacactcaccaaccattcactatgttcctggttgctttcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408502 acaaaaaacaaggttcataaactaatttgatatttccgaacttcaaaataaaagtaagcgacactcaccaaccattcactatgttcctggttgctttcat 30408403  T
Q  301 tgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaatccacg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30408402 tgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcatgtgctcatcgatccaccccttgaataccctaccaaatccacg 30408303  T
Q  401 ttcatcgagttcaccacttggatgaaagtttcttgtcgcagtttttacctcattgaatgtgaaacacttcaaattgttggattgtaatatctcaccctca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408302 ttcatcgagttcaccacttggatgaaagtttcttgtcgcagtttttacctcattgaatgtgaaacacttcaaattgttggattgtaatatctcaccctca 30408203  T
Q  501 gtccttgaagttagcagaacagttgaagaggataccttgttgctcaaaccacccgaaacaacctcttctcttccaacaacctctgaattcaaacctgtcc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30408202 gtccttgaagttagcagaacagttgaagaggataccttgttgctcaaaccacccgaaacaacctcttctcttccaacaacctctgaattcaaaccagtcc 30408103  T
Q  601 atgtcataatagaaacatgaactaacttttatgcaatattctggcaactatttttctaccaatattttcaatacaattnnnnnnnnttggtcttttcgtg 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| |||    
T  30408102 atgtcataatagaaacatgaactaacttttatgcaatattctggcaactatttttctaccaatattttcaatacaattaaaaaaaattggtcttttggtg 30408003  T
Q  701 tattnnnnnnnntatctttaagaaaattgagctcaaaactagtttgtt-nnnnnnnnntagagctcagataccaactgaacaaattaagaaagttaacaa 799  Q
    ||||         ||||||||||||||||||||||||||| |||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  30408002 tattaaaaaaaagatctttaagaaaattgagctcaaaactcgtttgttaaaaaaaaaatagagctcagataccaactgaacaaattaagaaagttaacaa 30407903  T
Q  800 ataaaaaaggggaaaatagaataacattagccataccattatgtgtaggattttcaactttgacccttgca 870  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30407902 ataaaaaaggggaaaatagaataacattagccataccattatgtgtaggattttcaactttgacccttgca 30407832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 260 - 674
Target Start/End: Complemental strand, 30411370 - 30410959
Alignment:
Q  260 gacactcaccaaccattcactatgttcc---tggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgc 356  Q
    ||||||||||||||||||| | ||| ||   ||| ||||||| ||| |||||||| | |||||||||||| ||||||||||| |||| ||||||||| ||    
T  30411370 gacactcaccaaccattcattctgtcccagttggctgctttctttgataaacatcttaacagcaacaacataaccagtaccttgtttagtaggagctagc 30411271  T
Q  357 gtgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatcgagttcaccacttggatgaaagtttcttgtcgcagtttttacctcattga 456  Q
    ||||||||||||||||||||||| || || |||||||| ||||||||||| | || ||| |||||||||||||   | || |||||||||| ||||||||    
T  30411270 gtgtgctcatcgatccaccccttaaagacactaccaaacccacgttcatccacttgaccgcttggatgaaagtacgtcgtagcagtttttagctcattga 30411171  T
Q  457 atgtgaaacacttcaaattgttggattgtaatatctcaccctcagtccttgaagttagcagaacagttgaagaggataccttgttgctcaaaccacccga 556  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||| |||||||||| |||||||||| ||||||| | |    
T  30411170 atgtgaaacacttcaaattgttgcattgtaatatctcaccctcagtctttgaagttagaagcacagatgaagaggatgccttgttgcttaaaccactcaa 30411071  T
Q  557 aacaacctcttctcttccaacaacctctgaattcaaacctgtccatgtcataatagaaacatgaactaacttttatgcaatattctggcaactatttttc 656  Q
    |||| ||||||| ||||||||||||| |||||||||      |||| |||||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  30411070 aacatcctcttcccttccaacaacctttgaattcaa------ccatatcataatagaaaaatgaactaacttttatgccatattctgccaactatttttc 30410977  T
Q  657 taccaatattttcaatac 674  Q
    |||||||| | |||||||    
T  30410976 taccaatagtgtcaatac 30410959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 263 - 598
Target Start/End: Complemental strand, 30421478 - 30421143
Alignment:
Q  263 actcaccaaccattcactatgttcctggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgc 362  Q
    |||||||||||||||||||||| ||||  ||||||| | ||||| | || | ||||||| ||||||||||||||||||||| ||||||||| | ||||||    
T  30421478 actcaccaaccattcactatgtccctgactgctttcttggttaagcctcttgacagcaataacaaaaccagtacctggtttagtaggagctagtgtgtgc 30421379  T
Q  363 tcatcgatccaccccttgaataccctaccaaatccacgttcatcgagttcaccacttggatgaaagtttcttgtcgcagtttttacctcattgaatgtga 462  Q
    ||||||||||| ||||| ||||| | ||||||||||| |||  | |    || |  |||| ||||||| |||||||| | | ||||||||||||  ||||    
T  30421378 tcatcgatccaacccttaaatacacaaccaaatccaccttcgccaatcatactatctggacgaaagttccttgtcgcggctcttacctcattgatagtga 30421279  T
Q  463 aacacttcaaattgttggattgtaatatctcaccctcagtccttgaagttagcagaacagttgaagaggataccttgttgctcaaaccacccgaaacaac 562  Q
    |||||||||||| ||| ||||| |||||||||||||| ||||| ||  |||| || |||| |||||| ||  || |  | || ||||||| ||||||| |    
T  30421278 aacacttcaaatagtttgattgcaatatctcaccctcggtcctagagcttagaagcacagatgaagaagaggcccttctacttaaaccactcgaaacatc 30421179  T
Q  563 ctcttctcttccaacaacctctgaattcaaacctgt 598  Q
    ||| ||||| |||||||||| |||||||||||||||    
T  30421178 ctcctctctcccaacaacctttgaattcaaacctgt 30421143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 214 - 611
Target Start/End: Complemental strand, 30404670 - 30404272
Alignment:
Q  214 ttcataaactaatttgatattt-ccgaacttcaaaataaaagtaagcgacactcaccaaccattcactatgttcctggttgctttcattgttaaacatca 312  Q
    |||||||||||||||| ||||| || |||||||||   ||| |||  |||||| |||||||||||||||||| |||| ||||||| || ||| | | ||     
T  30404670 ttcataaactaatttgttattttcctaacttcaaacagaaattaaatgacacttaccaaccattcactatgtccctgattgcttttatcgttgagcctct 30404571  T
Q  313 tcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatcgagttc 412  Q
    |||||| |||  |||||||||||||| |||| || || ||| | ||||||||||||||||| ||||| ||||| | ||||||||||| ||   | |        
T  30404570 tcacagaaacggcaaaaccagtaccttgtttagtcggggctagtgtgtgctcatcgatccaacccttaaatacacaaccaaatccacctttgccaatcat 30404471  T
Q  413 accacttggatgaaagtttcttgtcgcagtttttacctcattgaatgtgaaacacttcaaattgttggattgtaatatctcaccctcagtccttgaagtt 512  Q
    || |  |||||||||||| ||||| || | | ||||||| ||||  ||||||||| |||||||||||||| | |||| |||| |||||||||| ||||||    
T  30404470 actatctggatgaaagttccttgttgcggctcttacctcgttgatagtgaaacacgtcaaattgttggatcgcaatacctcatcctcagtcctagaagtt 30404371  T
Q  513 agcagaacagttgaagaggataccttgttgctcaaaccacccgaaacaacctcttctcttccaacaacctctgaattcaaacctgtccatgtcataata 611  Q
    ||  | |||  |||||||| | | |||| ||| ||||||| ||||||  |||||||||| ||||||||     ||||||||||||||||||||| ||||    
T  30404370 agaggcacaaatgaagaggctgctttgtagcttaaaccactcgaaacttcctcttctctcccaacaactatcaaattcaaacctgtccatgtcagaata 30404272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 30411547 - 30411448
Alignment:
Q  55 cctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaattgatttttgcctgaagtacaaggtttaattagtctcatca 154  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| || || |||||||||||||||||||||    
T  30411547 cctctaatcagtaaccaatcagtttcacgagattaggatgatgcagctgcccaagataattgatttctgcctaaaatataaggtttaattagtctcatca 30411448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 30421910 - 30421791
Alignment:
Q  1 gattatccaaatttcctttggtcatgaattcatatactaaaatccgataggaaccctctaagcagtaaccaatcagtttcacgagattaggatgacgcag 100  Q
    ||||||||||| |||| |||||||  ||||||||||| |||||||| |||  | |||||||||||||||| ||||||||||| ||||| |||||| ||||    
T  30421910 gattatccaaacttcccttggtcacaaattcatataccaaaatccggtagtcatcctctaagcagtaacctatcagtttcactagatttggatgatgcag 30421811  T
Q  101 ctgcccaaggtaattgattt 120  Q
    ||| ||||||||||||||||    
T  30421810 ctgtccaaggtaattgattt 30421791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 263 - 379
Target Start/End: Complemental strand, 30401252 - 30401136
Alignment:
Q  263 actcaccaaccattcactatgttcctggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgc 362  Q
    ||||||||||||||||||  ||||||||| |||  ||||||||| | || |||||||||||   ||||||| ||||||||| || ||  ||  |||||||    
T  30401252 actcaccaaccattcactgggttcctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccagaacctggtttagtggggcctaacgtgtgc 30401153  T
Q  363 tcatcgatccacccctt 379  Q
    |||||||||||||||||    
T  30401152 tcatcgatccacccctt 30401136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 790 - 866
Target Start/End: Complemental strand, 30404175 - 30404099
Alignment:
Q  790 aagttaacaaataaaaaaggggaaaatagaataacattagccataccattatgtgtaggattttcaactttgaccct 866  Q
    ||||||| |||||||||||||||| ||||||||||||||   |||||||||||| ||| | | ||||||||||||||    
T  30404175 aagttaaaaaataaaaaaggggaatatagaataacattaatgataccattatgtttagaagtctcaactttgaccct 30404099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 808 - 867
Target Start/End: Complemental strand, 30410726 - 30410667
Alignment:
Q  808 ggggaaaatagaataacattagccataccattatgtgtaggattttcaactttgaccctt 867  Q
    |||||||||||||||||||||   |||||||||||||||||| | |||||||||||||||    
T  30410726 ggggaaaatagaataacattaatgataccattatgtgtaggactctcaactttgaccctt 30410667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 30388948 - 30388899
Alignment:
Q  57 tctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgccc 106  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||||||||    
T  30388948 tctaagcagtaaccaatcagtctcacaagattaggatgactcagctgccc 30388899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 30401463 - 30401416
Alignment:
Q  55 cctctaagcagtaaccaatcagtttcacgagattaggatgacgcagct 102  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  30401463 cctctaagcagtaaccaatcagtctcacaagattaggatgacacagct 30401416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 30404785 - 30404720
Alignment:
Q  55 cctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaattgattt 120  Q
    |||||| ||| |||||||||| |||||| |||||||||||| ||||||| || || ||||||||||    
T  30404785 cctctatgcaataaccaatcaatttcacaagattaggatgatgcagctgtcccagataattgattt 30404720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 31445346 - 31445278
Alignment:
Q  55 cctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaattgatttttg 123  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||  | |||| |||||||||||    
T  31445346 cctctaagcagtaaccaatcagtttgacaagattaggatgacgcagctggtccaggtcattgatttttg 31445278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 34150148 - 34150088
Alignment:
Q  60 aagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaattgattt 120  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||| || |||||||||||||    
T  34150148 aagcagtaaccgatcagtttcacaagattaggatgatgcagctgtcccaggtaattgattt 34150088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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