View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_22 (Length: 379)
Name: NF11117_low_22
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 44694293 - 44693941
Alignment:
| Q |
11 |
cacagatgataagattccgaaggttggagtctccatggctctaagaccctaatctatgcccaggagataagctttcgtgttaaactgagaagttactgga |
110 |
Q |
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| T |
44694293 |
cacagatgataagattccgaaggttggagtctccatggctctaagaccctaatctatgcccaggagataagctttcgtgttaaactgagaagttgctgga |
44694194 |
T |
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| Q |
111 |
tgaggagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatatctatttatcacttctactttctga |
210 |
Q |
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| T |
44694193 |
tgaggagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatatctatttatcacttctactttctga |
44694094 |
T |
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| Q |
211 |
agtttaaaatcattcaagcttattcgtatacaaaattagtctctgaaaatagctctagacttgtttatttccattttcgaggatgtttaggattattcct |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
44694093 |
agtttaaaatcattcaagcttattcgtatacaaaattagtctctgaaaatagctctagacttgtttacttccattttcgacaatgtttaggattattcct |
44693994 |
T |
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| Q |
311 |
aaaggggagagaagatttctacaattaaaaagaaccctgaaatgcaagcaaac |
363 |
Q |
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| T |
44693993 |
aaaggggagagaagatttctacaattaaaaagaaccctgaaatgcaagcaaac |
44693941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 44664569 - 44664498
Alignment:
| Q |
115 |
gagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatat |
186 |
Q |
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| T |
44664569 |
gagacttttaaacaatgacacaaattggatataacttcttcaatatccaacaacattactagtattagatat |
44664498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 44684475 - 44684404
Alignment:
| Q |
115 |
gagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatat |
186 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||| |
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| T |
44684475 |
gagacttttaaacaatgacacaaattggatataacttcttcaatatccaacaacattactagtattagatat |
44684404 |
T |
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