View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11117_low_25 (Length: 370)

Name: NF11117_low_25
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11117_low_25
NF11117_low_25
[»] chr3 (8 HSPs)
chr3 (221-353)||(49137311-49137443)
chr3 (67-121)||(44052748-44052802)
chr3 (67-121)||(44352060-44352114)
chr3 (67-121)||(54536947-54537001)
chr3 (145-190)||(44052824-44052869)
chr3 (145-189)||(44351994-44352038)
chr3 (145-189)||(54537022-54537068)
chr3 (157-189)||(18321814-18321846)
[»] chr8 (6 HSPs)
chr8 (67-121)||(9600126-9600180)
chr8 (70-121)||(28395622-28395673)
chr8 (145-189)||(28395690-28395734)
chr8 (145-189)||(9600202-9600246)
chr8 (67-95)||(28395592-28395620)
chr8 (157-189)||(33071777-33071809)
[»] chr7 (2 HSPs)
chr7 (67-121)||(9356665-9356719)
chr7 (145-189)||(9356741-9356785)
[»] chr1 (2 HSPs)
chr1 (67-121)||(27242694-27242748)
chr1 (145-189)||(27242766-27242810)
[»] chr2 (2 HSPs)
chr2 (145-189)||(1288689-1288733)
chr2 (150-189)||(1198299-1198338)
[»] chr4 (1 HSPs)
chr4 (145-189)||(17626824-17626868)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 221 - 353
Target Start/End: Original strand, 49137311 - 49137443
Alignment:
Q  221 agggttaactagtgactttgttggtattaacctatattattggttaggttatatttatcttatggtcgaacttcagattatcatatccttttcccaaaga 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49137311 agggttaactagtgactttgttggtattaacctatattattggttaggttatatttatcttatggtcgaacttcagattatcatatctttttcccaaaga 49137410  T
Q  321 ctcagaagattaacaacaataatctatattatt 353  Q
    |||||||||||||||||||||||||||||||||    
T  49137411 ctcagaagattaacaacaataatctatattatt 49137443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 44052748 - 44052802
Alignment:
Q  67 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44052748 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 44052802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 44352114 - 44352060
Alignment:
Q  67 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 121  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44352114 cagacaaaaacaatcaggggaattcaagggtactatggtaattttcagtatacaa 44352060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 54536947 - 54537001
Alignment:
Q  67 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 121  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54536947 cagacaaaaacaatcagggaaattcaagggtactatagtaattttcagtatacaa 54537001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 44052824 - 44052869
Alignment:
Q  145 gggggtgccacagcacctgggggtctcaatagagatccgcccctgt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44052824 gggggtgccacagcacctgggggtctcaatagagatccgcccctgt 44052869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 44352038 - 44351994
Alignment:
Q  145 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44352038 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 44351994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 54537022 - 54537068
Alignment:
Q  145 gggggtgccacagcacc--tgggggtctcaatagagatccgcccctg 189  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  54537022 gggggtgccacagcacccctgggggtctcaatagagatccgcccctg 54537068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 18321846 - 18321814
Alignment:
Q  157 gcacctgggggtctcaatagagatccgcccctg 189  Q
    |||||||||||||||||||||||||||||||||    
T  18321846 gcacctgggggtctcaatagagatccgcccctg 18321814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 9600126 - 9600180
Alignment:
Q  67 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9600126 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 9600180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 28395622 - 28395673
Alignment:
Q  70 acaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28395622 acaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 28395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 28395690 - 28395734
Alignment:
Q  145 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28395690 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 28395734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 9600202 - 9600246
Alignment:
Q  145 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 189  Q
    |||||||||||| |||||| |||||||||||||||||||||||||    
T  9600202 gggggtgccacaacacctgagggtctcaatagagatccgcccctg 9600246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 28395592 - 28395620
Alignment:
Q  67 cagacaaaaacaatcaggggaattcaagg 95  Q
    |||||||||||||||||||||||||||||    
T  28395592 cagacaaaaacaatcaggggaattcaagg 28395620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 33071777 - 33071809
Alignment:
Q  157 gcacctgggggtctcaatagagatccgcccctg 189  Q
    ||||||||||||||||| |||||||||||||||    
T  33071777 gcacctgggggtctcaacagagatccgcccctg 33071809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 9356665 - 9356719
Alignment:
Q  67 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9356665 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 9356719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 9356741 - 9356785
Alignment:
Q  145 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9356741 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 9356785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 27242694 - 27242748
Alignment:
Q  67 cagacaaaaacaatcaggggaattcaagggtactatagtaattttcagtatacaa 121  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27242694 cagacaaaaataatcaggggaattcaagggtactatagtaattttcagtatacaa 27242748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 27242766 - 27242810
Alignment:
Q  145 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27242766 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 27242810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 1288689 - 1288733
Alignment:
Q  145 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 189  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  1288689 gggggtgccacggcacctgggggtctcaatagagatccgcccctg 1288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 1198299 - 1198338
Alignment:
Q  150 tgccacagcacctgggggtctcaatagagatccgcccctg 189  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  1198299 tgccacggcacctgggggtctcaatagagatccgtccctg 1198338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 17626824 - 17626868
Alignment:
Q  145 gggggtgccacagcacctgggggtctcaatagagatccgcccctg 189  Q
    ||||||||||| | |||||||||||||||||||||||||||||||    
T  17626824 gggggtgccacggaacctgggggtctcaatagagatccgcccctg 17626868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University