View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_low_26 (Length: 370)
Name: NF11117_low_26
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 30601226 - 30601582
Alignment:
| Q |
1 |
acatacacaacaacaaaccataagaaaacaagaatcttctacattgtacacacaaatatggtattattaaggttctctttgaacatatnnnnnnntcttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30601226 |
acatacacaacaacaaaccataacaaaacaagaatcttctacattgtacacacaaatatggtattattaaggttctctttgaacatataaaaaaatcttc |
30601325 |
T |
|
| Q |
101 |
ttcacaaaccacttcaagttcaattttttcctaaaaaaccattccaaatctatttcacctattagaccaaacttcacttctgaagttacgctgaaagtac |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||||||||||| |
|
|
| T |
30601326 |
ttcacaaaccacttcaagttcaatcttttcctaaaaaaccattccaaatctatttcacctattagaccaaatttcacttctcaactcacgctgaaagtac |
30601425 |
T |
|
| Q |
201 |
cgagtgtgacttaagtcagagatgctaaaccaacccaactcagaaaactcatccaccaatccattgaatcaactagcacaaaacatgtcctccgacaact |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30601426 |
cgagtgtaacttaagtcagagatgctaaaccaacccaactcagaaaactcatccaccaatccattgaatcaactagcacaaaacatgtcctccgacaact |
30601525 |
T |
|
| Q |
301 |
acatcatgcttgcagcaatcatttctctcctcctagtaatcatctttgtcctccttc |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30601526 |
acatcatgcttgcagcaatcatttctctcctcctagtaatcatctttgtcctccttc |
30601582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 7255032 - 7255062
Alignment:
| Q |
188 |
acgctgaaagtaccgagtgtgacttaagtca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7255032 |
acgctgaaagtaccgagtgtgacttaagtca |
7255062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University