View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11117_low_27 (Length: 362)

Name: NF11117_low_27
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11117_low_27
NF11117_low_27
[»] chr7 (21 HSPs)
chr7 (23-342)||(3799339-3799671)
chr7 (192-307)||(44002529-44002645)
chr7 (42-306)||(28105789-28106067)
chr7 (23-101)||(28589975-28590053)
chr7 (23-102)||(773712-773792)
chr7 (39-101)||(30739297-30739359)
chr7 (37-83)||(40841092-40841138)
chr7 (23-101)||(26633517-26633597)
chr7 (37-175)||(44002681-44002827)
chr7 (37-101)||(42312180-42312244)
chr7 (15-101)||(18015409-18015499)
chr7 (23-101)||(41852131-41852209)
chr7 (23-101)||(1366163-1366243)
chr7 (23-101)||(25610220-25610300)
chr7 (24-101)||(36438181-36438260)
chr7 (37-101)||(44875989-44876051)
chr7 (25-75)||(21145512-21145562)
chr7 (15-101)||(33910209-33910300)
chr7 (23-83)||(46221551-46221613)
chr7 (15-83)||(12251136-12251207)
chr7 (23-76)||(40001566-40001621)
[»] chr5 (16 HSPs)
chr5 (40-332)||(17463018-17463324)
chr5 (37-163)||(4177370-4177499)
chr5 (268-333)||(4177569-4177634)
chr5 (23-101)||(27351504-27351583)
chr5 (15-83)||(12661454-12661523)
chr5 (37-101)||(23069394-23069458)
chr5 (23-101)||(33281829-33281908)
chr5 (15-99)||(19099145-19099233)
chr5 (23-101)||(43511772-43511852)
chr5 (188-276)||(13288780-13288867)
chr5 (37-82)||(931539-931584)
chr5 (23-101)||(3349559-3349639)
chr5 (37-133)||(13288613-13288712)
chr5 (15-101)||(26312133-26312222)
chr5 (15-83)||(26377623-26377692)
chr5 (23-101)||(42291709-42291791)
[»] chr1 (14 HSPs)
chr1 (23-333)||(50371289-50371616)
chr1 (226-349)||(8115603-8115729)
chr1 (37-172)||(39080377-39080515)
chr1 (37-101)||(9777585-9777649)
chr1 (39-101)||(26486205-26486267)
chr1 (23-91)||(15441444-15441512)
chr1 (32-83)||(1269717-1269768)
chr1 (15-83)||(28885520-28885590)
chr1 (15-83)||(50552640-50552710)
chr1 (40-97)||(5560656-5560713)
chr1 (37-101)||(30004736-30004802)
chr1 (15-101)||(52240365-52240455)
chr1 (15-83)||(51109950-51110020)
chr1 (39-83)||(27703382-27703426)
[»] chr8 (14 HSPs)
chr8 (37-307)||(12268531-12268818)
chr8 (37-101)||(33452929-33452993)
chr8 (209-321)||(7754842-7754954)
chr8 (23-101)||(12531713-12531793)
chr8 (26-101)||(3471757-3471834)
chr8 (23-89)||(32098019-32098087)
chr8 (23-85)||(34523799-34523863)
chr8 (24-101)||(42076264-42076343)
chr8 (37-101)||(5869150-5869212)
chr8 (21-63)||(23567143-23567186)
chr8 (39-101)||(35875071-35875133)
chr8 (15-83)||(1004202-1004271)
chr8 (15-101)||(42951623-42951714)
chr8 (37-101)||(43926154-43926218)
[»] chr2 (13 HSPs)
chr2 (37-333)||(26261444-26261762)
chr2 (23-101)||(1226096-1226177)
chr2 (192-349)||(24233380-24233539)
chr2 (23-101)||(36059735-36059815)
chr2 (23-101)||(17117475-17117555)
chr2 (37-124)||(4264680-4264770)
chr2 (15-83)||(6530804-6530874)
chr2 (23-175)||(24233575-24233731)
chr2 (15-83)||(7993778-7993847)
chr2 (23-83)||(9029749-9029811)
chr2 (15-83)||(13020568-13020637)
chr2 (23-83)||(18676159-18676220)
chr2 (15-83)||(36481539-36481610)
[»] chr4 (10 HSPs)
chr4 (192-349)||(9925445-9925602)
chr4 (37-101)||(26328859-26328924)
chr4 (23-101)||(55134363-55134443)
chr4 (15-83)||(41038395-41038464)
chr4 (72-128)||(9925302-9925358)
chr4 (39-101)||(24449271-24449333)
chr4 (15-83)||(27632543-27632613)
chr4 (15-83)||(32130639-32130709)
chr4 (37-66)||(5545499-5545528)
chr4 (210-242)||(10387212-10387244)
[»] chr6 (9 HSPs)
chr6 (37-101)||(11088741-11088805)
chr6 (37-101)||(350587-350652)
chr6 (23-102)||(1092870-1092951)
chr6 (39-101)||(6294426-6294490)
chr6 (23-101)||(29308297-29308377)
chr6 (23-101)||(30915191-30915271)
chr6 (15-101)||(57833-57918)
chr6 (15-83)||(2618500-2618569)
chr6 (37-101)||(1690547-1690611)
[»] chr3 (7 HSPs)
chr3 (38-99)||(21596505-21596566)
chr3 (23-101)||(7767220-7767300)
chr3 (40-91)||(1649681-1649732)
chr3 (23-66)||(15998438-15998481)
chr3 (15-83)||(51939404-51939474)
chr3 (23-101)||(46904896-46904976)
chr3 (37-101)||(40151960-40152024)
[»] scaffold0034 (1 HSPs)
scaffold0034 (37-101)||(99086-99150)
[»] scaffold0181 (1 HSPs)
scaffold0181 (15-101)||(16962-17051)
[»] scaffold0035 (1 HSPs)
scaffold0035 (15-83)||(22654-22724)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 23 - 342
Target Start/End: Complemental strand, 3799671 - 3799339
Alignment:
Q  23 ctctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaattttatacgttgttgaa 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3799671 ctctttcacttaatttttttatttcgtttcatgtttagaagttcttctgattctgatttttaaatgaagtttagctacatgaattttatacgttgttgaa 3799572  T
Q  123 tgcttattagtgtttagtttttaaaatgccagtgtataattgcaaattttgtttatatgattttgatatatgttgaatgtcgaaattttttgttatatgt 222  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3799571 tgcttattagtatttagtttttaaaatgccagtgtataattgcaaattttgtttatatgattttgatatatgttgaatgtcgaaaatttttgttatatgt 3799472  T
Q  223 tggatgttgaaaaatataattgttatttttattatatgttggatattgaatgttaacaaattttggt-------------atatgatgctaatatatgac 309  Q
    |||||||||||| ||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||             ||||||||||||||||||||    
T  3799471 tggatgttgaaatatataattgctatttttgttatatgttggacattgaatgttgacaaattttggtatataattttggcatatgatgctaatatatgac 3799372  T
Q  310 tctaaaatttcaagttttacatttatttcagtc 342  Q
    ||| |||||||||||||||||||||||||||||    
T  3799371 tcttaaatttcaagttttacatttatttcagtc 3799339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 44002645 - 44002529
Alignment:
Q  192 atgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattgttatttttat--tatatgttggatattgaatgttaacaaattttggt 289  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || |||| |  |||||||||||  ||||||||| |||| |||||||    
T  44002645 atgttgaatgtcgaaattttt-gttatatgttgaatgttgaaaaatataattgctaattttgttatatatgttggacgttgaatgttgacaagttttggt 44002547  T
Q  290 atatgatgctaatatatg 307  Q
    ||||| ||||||||||||    
T  44002546 atatgttgctaatatatg 44002529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 306
Target Start/End: Original strand, 28105789 - 28106067
Alignment:
Q  42 tatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaattttat---acgttgttgaatgcttattagtgttta 138  Q
    |||||||||||||||||| |||||  | | ||||| |||| | ||||||| ||||||||||||| |||||   | |||| | ||||||||||| |  |||    
T  28105789 tatttcgtttcatgtttaaaagtttttctgattctaatttcttaatgaagcttagctacatgaagtttattatatgttgcttaatgcttattaataatta 28105888  T
Q  139 gtttttaaaatgccagtgtataattgcaaattttgtt------------tatatgattttgatatatgttgaatgtcgaaattttttgttatatgttgga 226  Q
     ||||||||||  |||||||||||| | |||||||||            |||||| || | |||||||| ||||||||||||||| |||||||||||| |    
T  28105889 ctttttaaaatttcagtgtataattcctaattttgttgaatgttgcaaatatatggttctaatatatgtcgaatgtcgaaatttt-tgttatatgttgaa 28105987  T
Q  227 tgttgaaaaatataattgttatttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatat 306  Q
    |||||||||||| ||||| |  |||| |||||   ||||  |||||| |  ||||||||||||||||  |||||||||||    
T  28105988 tgttgaaaaatacaattgatgattttgttatacaatggaagttgaatatcgacaaattttggtatatattgctaatatat 28106067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 28590053 - 28589975
Alignment:
Q  23 ctctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||| ||||||| |||| |||||| |||||||||||||| ||| | | |||||||||||| |||||||||||||||||    
T  28590053 ctcttccacttaatttttctatttcatttcatgtttagaaattcttctgattctgattttttaatgaagtttagctaca 28589975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 773792 - 773712
Alignment:
Q  23 ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacat 102  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| | | ||| |||||||| ||||||| ||| ||||||    
T  773792 ctctttcacttaattttttttatttcgtttcatgtttagaagttcttctgattttgattttttaatgaagcttaactacat 773712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 30739297 - 30739359
Alignment:
Q  39 ttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||| |||||||| ||||||||| | | |||||||||||| |||||||||||||||||    
T  30739297 ttttatttcatttcatgtatagaagttcttctgattctgattttttaatgaagtttagctaca 30739359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 40841138 - 40841092
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  40841138 ttttttatttcgtttcatgtttagaagttcttctaattctgattttt 40841092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 26633517 - 26633597
Alignment:
Q  23 ctctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| |||  ||||||| |||||||||||||| |||| | | |||||||||||| ||||||| |||||||||    
T  26633517 ctctttcacttaattttattttattttgtttcatgtttagacgttcttctgattctgattttttaatgaagcttagctaca 26633597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 44002827 - 44002681
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaa--------ttttatacgttgttgaatgctta 128  Q
    ||||||||||| |||||||||||||||||| | | ||| | |||||| ||||||| ||||||||| |||        | ||| |||||| | ||||||||    
T  44002827 ttttttatttcatttcatgtttagaagttcttctgattataattttttaatgaagcttagctacacgaactttaatttgttacacgttgcttaatgctta 44002728  T
Q  129 ttagtgtttagtttttaaaatgccagtgtataattgcaaattttgtt 175  Q
    |||||  ||| ||||||||||  || ||||||||||| |||||||||    
T  44002727 ttagtaattactttttaaaatttcaatgtataattgctaattttgtt 44002681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 42312180 - 42312244
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||||||||||||||||||||||||| | | ||||| |||||| ||||||| ||| |||||    
T  42312180 ttttttatttcgtttcatgtttagaagttcttctgattctaattttttaatgaagcttaactaca 42312244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 18015499 - 18015409
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgat--ttttaaatgaagtttagctaca 101  Q
    ||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | ||||||||||  |||| |||||| ||||||||||    
T  18015499 aaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctaattctgattttttttaatgaaatttagctaca 18015409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 41852209 - 41852131
Alignment:
Q  23 ctctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||||||||||| | ||||| |||||| | | |||||||||| | ||||||  |||||||||    
T  41852209 ctctttcacttaatttttttatttcgtttgacgtttaaaagttcttctgattctgatttcttaatgaaacttagctaca 41852131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 1366163 - 1366243
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||  ||||||||||||||||| ||| || | | |||||||||||| ||| ||| |||||||||    
T  1366163 ctctttcacttaatttttttgtatttcgtttcatgtttacaagctcttctgattctgattttttaataaagcttagctaca 1366243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 25610220 - 25610300
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||  |||||||||||||||| |||| || | | |||||||||||| ||| ||| |||||||||    
T  25610220 ctctttcacttaatttttttgtatttcgtttcatgtttggaagctcttctgattctgattttttaataaagcttagctaca 25610300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 36438260 - 36438181
Alignment:
Q  24 tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||||||| |||  ||| ||| |||||||||||| |||||| | | |||||||||||| ||||||| |||||||||    
T  36438260 tctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagctaca 36438181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 44876051 - 44875989
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctga-tttttaaatgaagtttagctaca 101  Q
    ||||||||||| ||||||||||||||||||   | ||||||| ||||| |||||||||||||||||    
T  44876051 ttttttatttcatttcatgtttagaagttc---ttattctgatttttttaatgaagtttagctaca 44875989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 21145512 - 21145562
Alignment:
Q  25 ctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattc 75  Q
    ||||||||||| |||||||||||||||||||| || |||||| | ||||||    
T  21145512 ctttcacttaatttttttatttcgtttcatgtataaaagttcttctaattc 21145562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 33910209 - 33910300
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctga---tttttaaatgaagtttagctaca 101  Q
    ||||||||| |||||||||||| |||||| | ||| |||||||||||||||||  | | |||||||   ||||| |||||||||||||||||    
T  33910209 aaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttattcttattctgatttttttttaatgaagtttagctaca 33910300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 46221613 - 46221551
Alignment:
Q  23 ctctttcacttaagtttttt---atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||||||| ||||||   ||||| |||||||||||||||||| | ||||||||||||||    
T  46221613 ctctttcacttaatttttttttaatttc-tttcatgtttagaagttcttctaattctgattttt 46221551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 12251207 - 12251136
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| |||||| |  ||| |||||||||||||||||| | | ||||||||||||    
T  12251207 aaatttcacctctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgattttt 12251136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 40001621 - 40001566
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattct 76  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || | |||||||    
T  40001621 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctaattct 40001566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 332
Target Start/End: Original strand, 17463018 - 17463324
Alignment:
Q  40 tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatttt---atacgttgttgaatgcttattagtgtt 136  Q
    ||||||||||||||||||||||||||| | |||||||  ||||| ||||||| ||| ||||| |||||||   |||| ||| | |||||||||||||  |    
T  17463018 tttatttcgtttcatgtttagaagttcttctaattctagttttttaatgaagcttaactacacgaattttgttatacattgcttaatgcttattagtaat 17463117  T
Q  137 tagtttttaaaatgccagtgtataattgcaaattttgtt------------tatatgattttgatatatgttgaatgtcgaaattttttgttatatgttg 224  Q
    || ||||||||||  |||||||| ||||| |||||||||            ||||| ||| | |||||||||||||||| ||||    | ||||||||||    
T  17463118 tactttttaaaatttcagtgtatcattgctaattttgttgaatgttgcaaatatattattctaatatatgttgaatgtcaaaataaaat-ttatatgttg 17463216  T
Q  225 gatgttgaaaaatataattgttatttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagt 324  Q
     ||||||||||||||||||| || |||| ||||||||||| | ||||||||| ||||||||||||||||  |||||||||||| |||  |||||| | ||    
T  17463217 aatgttgaaaaatataattgctaattttgttatatgttgggtgttgaatgttgacaaattttggtatatattgctaatatatgcctcctaaattttaggt 17463316  T
Q  325 tttacatt 332  Q
    ||||||||    
T  17463317 tttacatt 17463324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 163
Target Start/End: Original strand, 4177370 - 4177499
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgttgaatgcttattagt 133  Q
    |||||||||| ||||||||||||||||||| | | ||| |||||||| ||||||| ||| ||||| |||||   |||||| ||| | |||| ||||||||    
T  4177370 ttttttattttgtttcatgtttagaagttcttctgattatgattttttaatgaagcttaactacacgaattttgttatacattgcttaatgattattagt 4177469  T
Q  134 gtttagtttttaaaatgccagtgtataatt 163  Q
      ||| ||||||||||  ||||||||||||    
T  4177470 aattactttttaaaatttcagtgtataatt 4177499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 4177569 - 4177634
Alignment:
Q  268 ttgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagttttacattt 333  Q
    ||||||||| ||||||||||||||||| | |||||||||| |||  ||||||||||||||||||||    
T  4177569 ttgaatgttgacaaattttggtatatgttactaatatatgcctcctaaatttcaagttttacattt 4177634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 27351504 - 27351583
Alignment:
Q  23 ctctttcacttaagtttt-ttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||| | | ||||  |||||| |||||||||||||||||    
T  27351504 ctctttcacttaattttttttatttcctttcatgtttagaagttcttctgattcgaattttttaatgaagtttagctaca 27351583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 12661454 - 12661523
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| ||||||| ||| |||||||||||||||||| | | ||||||||||||    
T  12661454 aaatttcacatctttcacttaatttttttaattcctttcatgtttagaagttcttctgattctgattttt 12661523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 23069394 - 23069458
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||| |||||||| ||||||||||| | ||||| |||||||| ||||||| |||||||||    
T  23069394 ttttttattacgtttcatatttagaagttcttctaattttgattttttaatgaagcttagctaca 23069458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 33281829 - 33281908
Alignment:
Q  23 ctctttcacttaagttttt-tatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||  ||||| ||||| ||||||||||||||||||| ||| ||| |||| ||| ||||||||||| |||||    
T  33281829 ctctttcacttatttttttatattttgtttcatgtttagaagttcttttgattatgatcttttaatgaagtttaactaca 33281908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 19099233 - 19099145
Alignment:
Q  15 aaatttcac-tctttcacttaagtttt-ttatttcgtttcatgtttagaagttcatttaattctga--tttttaaatgaagtttagcta 99  Q
    ||||||||| |||||||||||| |||| ||| ||| |||||||||||||||||| | | |||||||  ||||| |||||||||||||||    
T  19099233 aaatttcacctctttcacttaatttttcttaattcttttcatgtttagaagttcttctgattctgaattttttcaatgaagtttagcta 19099145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 43511772 - 43511852
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||   | |||||||||||| ||| ||| |||||||||    
T  43511772 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctctgctgattctgattttttaataaagcttagctaca 43511852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 13288780 - 13288867
Alignment:
Q  188 atatatgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattgttatttttattatatgttggatattgaatgtt 276  Q
    |||||||||||||| ||||||||||  |||||||||| | || |||||||||||||| || ||||  |||||| ||||  |||||||||    
T  13288780 atatatgttgaatgccgaaattttta-ttatatgttgaaggtcgaaaaatataattgctaattttgctatatgatggacgttgaatgtt 13288867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 931539 - 931584
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttt 82  Q
    ||||| |||||||||||||||||||||||  | |||||||||||||    
T  931539 tttttaatttcgtttcatgtttagaagtttttctaattctgatttt 931584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 3349639 - 3349559
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||||| |||||||||  |||| |||||||||||||||  || | | |||||||||||| ||| ||| |||||||||    
T  3349639 ctctttcactcaagttttttgtatttagtttcatgtttagaaactcttctgattctgattttttaataaagcttagctaca 3349559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 13288613 - 13288712
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgttgaatgcttattagt 133  Q
    |||||||||| |||||||||||| | |||| | | ||| |||||||| ||||||  ||||||||| |||||   |||||| ||| | |||||||||||||    
T  13288613 ttttttattttgtttcatgtttaaatgttcttctgattatgattttttaatgaaacttagctacaagaattttgttatacattgcttaatgcttattagt 13288712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 26312133 - 26312222
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctga-tttttaaatgaagtttagctaca 101  Q
    ||||||||| |||||||||||| |||||| | ||| |||||||||||||| ||| | | ||||||| ||||| |||||| ||||||||||    
T  26312133 aaatttcacctctttcacttaattttttttaattcctttcatgtttagaacttcttctgattctgatttttttaatgaaatttagctaca 26312222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 26377692 - 26377623
Alignment:
Q  15 aaatttca-ctctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    |||||||| |||||||||||||  |||||| ||| |||||||||||||| ||| | | ||||||||||||    
T  26377692 aaatttcatctctttcacttaatatttttaattcctttcatgtttagaacttcttctgattctgattttt 26377623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 42291791 - 42291709
Alignment:
Q  23 ctctttcacttaagtttttt----atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||    ||||||||||||||||||||| || | | ||||||||||||  || ||||||| |||||    
T  42291791 ctctttcacttaatttttttttgtatttcgtttcatgtttagaagctcttctgattctgatttttttataaagtttaactaca 42291709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 333
Target Start/End: Original strand, 50371289 - 50371616
Alignment:
Q  23 ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatttt---atacgttgt 118  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| | | |||||||||||| ||||||| |||||||||  ||||||   ||| ||||     
T  50371289 ctctttcacttaattttttttatttcgtttcatgtttagaagttcttatgattctgattttttaatgaagcttagctacacaaattttgttataagttgc 50371388  T
Q  119 tgaatgcttattagtgtttagtttttaaaatgccagtgtataattgcaaattttgtt------------tatatgattttgatatatgttgaatgtcgaa 206  Q
    | ||||||||| |||  ||| | || |||||  || ||||||||||  |||||||||            |||||| || | ||||||||||||||| |||    
T  50371389 ttaatgcttatcagtaattactcttcaaaatttcaatgtataattgttaattttgttgaatgttgcaaatatatggttctaatatatgttgaatgttgaa 50371488  T
Q  207 atttt-ttgttatatgttggatgttgaaaaatataattgttatttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatata 305  Q
     |||| ||||||||||||| ||||||||||||||||||| || |||| |||||||||||||  |||||||| | |||||||||||| || | ||||||||    
T  50371489 ttttttttgttatatgttgaatgttgaaaaatataattgctaattttgttatatgttggatgctgaatgttgataaattttggtatttgttactaatata 50371588  T
Q  306 tgactctaaaatttcaagttttacattt 333  Q
    |  |||  |||||||| ||| |||||||    
T  50371589 tatctcctaaatttcaggttctacattt 50371616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 349
Target Start/End: Original strand, 8115603 - 8115729
Alignment:
Q  226 atgttgaaaaatataattgttatttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatgactctaaaatttcaagtt 325  Q
    |||||| |||||||||||| || |||| ||||||||||||  ||||||||| ||||||||||||||||| |||||||||||| ||  ||||||||| |||    
T  8115603 atgttggaaaatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggtt 8115702  T
Q  326 ttacatttat---ttcagtcttcctct 349  Q
     ||||||| |   ||||||||||||||    
T  8115703 ctacattttttccttcagtcttcctct 8115729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 39080515 - 39080377
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgttgaatgcttattagt 133  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||| ||||||| ||||||||||| |||   |||||| ||| | |||||||||| ||    
T  39080515 ttttttatttcatttcatgtttagaagttcttatgattctgatttttcaatgaagcttagctacatggattttgttatacattgcttaatgcttatttgt 39080416  T
Q  134 gtttagtttttaaaatgccagtgtataattgcaaatttt 172  Q
      |||  |||||||||  |||||||||||||| ||||||    
T  39080415 aattacgttttaaaatttcagtgtataattgctaatttt 39080377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 9777585 - 9777649
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||||| ||||||||||||||||||  | |||||||||||||| |||||||||||||||||    
T  9777585 ttttttatttagtttcatgtttagaagttattctaattctgattttttaatgaagtttagctaca 9777649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 26486267 - 26486205
Alignment:
Q  39 ttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||| |||||||||||| |||||| | | |||||||||||||||||||| |||||||||    
T  26486267 ttttattttgtttcatgtttaaaagttcttctgattctgatttttaaatgaagcttagctaca 26486205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 15441444 - 15441512
Alignment:
Q  23 ctctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaag 91  Q
    ||||||||||||  ||||||||| |||||||||||||||||||| | | ||| |||||||| |||||||    
T  15441444 ctctttcacttattttttttattccgtttcatgtttagaagttcttctgattttgattttttaatgaag 15441512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 1269717 - 1269768
Alignment:
Q  32 ttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    |||| ||||||||||||||||||||||||||||||  || ||||||||||||    
T  1269717 ttaatttttttatttcgtttcatgtttagaagttctattgattctgattttt 1269768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 28885590 - 28885520
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | ||||||||||||||    
T  28885590 aaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctaattctgattttt 28885520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 50552640 - 50552710
Alignment:
Q  15 aaatttca-ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    |||||||| ||||||||||||| |||||| | ||| |||||||||||||||||| ||| ||||||||||||    
T  50552640 aaatttcatctctttcacttaattttttttaattcctttcatgtttagaagttcttttgattctgattttt 50552710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 5560656 - 5560713
Alignment:
Q  40 tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagc 97  Q
    ||||||| ||||||||||||||||||| ||| |||| ||| ||| |||||||||||||    
T  5560656 tttattttgtttcatgtttagaagttcttttgattcagatcttttaatgaagtttagc 5560713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 30004802 - 30004736
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgattt--ttaaatgaagtttagctaca 101  Q
    ||||||| ||| |||||||||||||||||| | | ||||||||||  || |||||||||||||||||    
T  30004802 ttttttaattcctttcatgtttagaagttcttctgattctgatttaattcaatgaagtttagctaca 30004736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 52240455 - 52240365
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgat--ttttaaatgaagtttagctaca 101  Q
    ||||||||| |||||||||||| |||||| | ||| |||||| ||||||||||| | | ||||||||  |||| |||||||||||||||||    
T  52240455 aaatttcacctctttcacttaattttttttaattcctttcatatttagaagttcttctgattctgattttttttaatgaagtttagctaca 52240365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 51110020 - 51109950
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| |||||| | ||| |||||||||||||| ||| | ||||||||||||||    
T  51110020 aaatttcacctctttcacttaattttttttaattcctttcatgtttagaaattcttctaattctgattttt 51109950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 27703426 - 27703382
Alignment:
Q  39 ttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    |||||||||||||||||||||||||||  | | ||||||||||||    
T  27703426 ttttatttcgtttcatgtttagaagttattatgattctgattttt 27703382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 307
Target Start/End: Complemental strand, 12268818 - 12268531
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatttt---atacgttgttgaatgcttattagt 133  Q
    |||||||||||||||||||||||| ||||  | | ||| |||||||| ||||||| ||| |||||||||||||   |||||||| | || || |||||||    
T  12268818 ttttttatttcgtttcatgtttagtagttattctgattatgattttttaatgaagcttatctacatgaattttgttatacgttgcttaaggcgtattagt 12268719  T
Q  134 gtttagtttttaaaatgccagtgtataattgcaaattttgtt------------tatatgattttgata---tatgttgaatgtcgaaattttttgttat 218  Q
      ||| ||||||||||  |||||||||||||| |||||||||            |||||  || | |||   |||||||||||||||||||||| |||||    
T  12268718 aattactttttaaaatttcagtgtataattgctaattttgttaaatgttgtaaatatatagttctaataatatatgttgaatgtcgaaattttt-gttat 12268620  T
Q  219 atgttggatgttgaaaaatataattgttatttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatg 307  Q
    |||||| | ||||||||||||||||| || |||| ||||||| ||||  ||||||||| ||||||||||||||||| ||||||||||||    
T  12268619 atgttgaaggttgaaaaatataattgctaattttgttatatgatggacgttgaatgttgacaaattttggtatatgttgctaatatatg 12268531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 33452929 - 33452993
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||||    
T  33452929 ttttttatttcgtttcatgtttagaagttcttctaattatgattttttaatgaagtttagctaca 33452993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 321
Target Start/End: Complemental strand, 7754954 - 7754842
Alignment:
Q  209 tttttgttatatgttggatgttgaaaaatataattgttatttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatga 308  Q
    |||||||||||||||| |  |||||||||||||||| || |||| ||| |   ||||  ||||||||| ||||||||||||||||| ||||||||||||     
T  7754954 tttttgttatatgttgaacattgaaaaatataattgctaattttgttacaaagtggacgttgaatgttgacaaattttggtatatgttgctaatatatgc 7754855  T
Q  309 ctctaaaatttca 321  Q
    |||  ||||||||    
T  7754854 ctcctaaatttca 7754842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 12531713 - 12531793
Alignment:
Q  23 ctctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||||  ||||||||||||||||||| || | | |||||||||||| ||| ||| |||||||||    
T  12531713 ctctttcacttaatttttttatatttcgtttcatgtttagaagctcttcttattctgattttttaataaagcttagctaca 12531793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 3471757 - 3471834
Alignment:
Q  26 tttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctga--tttttaaatgaagtttagctaca 101  Q
    |||||||||| ||||||| ||| ||| |||||||||||||| | | |||||||  ||||| |||||||||||||||||    
T  3471757 tttcacttaatttttttaattcctttaatgtttagaagttcttatgattctgattttttttaatgaagtttagctaca 3471834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 32098087 - 32098019
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatga 89  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||| | |||  ||||||| |||||    
T  32098087 ctctttcacttaatttttttttatttcgtttcatgtttagaagttcatctgatttcgattttttaatga 32098019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 34523863 - 34523799
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaa 85  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || | | ||||||||||||||    
T  34523863 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctgatttttaa 34523799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 42076264 - 42076343
Alignment:
Q  24 tctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||||||| |||  ||| ||| |||||||||||| |||||| ||| |||||||||||| ||||||| ||| |||||    
T  42076264 tctttcacttaattttattttgttttgtttcatgtttaaaagttcttttgattctgattttttaatgaagcttatctaca 42076343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 5869212 - 5869150
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctga-tttttaaatgaagtttagctaca 101  Q
    ||||||||||| ||||||||||||||||||   | ||||||| ||||| |||||||||||||||||    
T  5869212 ttttttatttcatttcatgtttagaagttc---ttattctgatttttttaatgaagtttagctaca 5869150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 23567186 - 23567143
Alignment:
Q  21 cactctttcacttaagttttt-tatttcgtttcatgtttagaag 63  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||    
T  23567186 cactctttcacttaattttttgtatttcgtttcatgtttagaag 23567143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 35875071 - 35875133
Alignment:
Q  39 ttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||| |||||||||||| |||||| | | |||||||||||| ||||||| |||| ||||    
T  35875071 ttttattttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagttaca 35875133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 1004202 - 1004271
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||||||| || ||| | | ||||||||||||    
T  1004202 aaatttcacctctttcacttaatttttttaattcctttcatgtttaaaacttcttctgattctgattttt 1004271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 42951714 - 42951623
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgat---ttttaaatgaagtttagctaca 101  Q
    ||||||||| |||||||||||| |||||| | ||| |||||||||| ||||||| | | ||||||||   ||||||||||| ||||||||||    
T  42951714 aaatttcacctctttcacttaattttttttaattcctttcatgtttggaagttcttatgattctgattttttttaaatgaaatttagctaca 42951623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 43926218 - 43926154
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||| ||| |||||||||||||| ||| | | |||||||||||| | |||| ||||||||||    
T  43926218 ttttttaattcctttcatgtttagaacttcttctgattctgattttttagtgaaatttagctaca 43926154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 37 - 333
Target Start/End: Original strand, 26261444 - 26261762
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgattttta-aatgaagtttagctacatgaatttt---atacgttgttgaatgcttattag 132  Q
    |||||||||||||||||||||||||||||| | | ||| ||||||||  ||||||| |||| |||| |||||||   ||| |||| | ||||||||||||    
T  26261444 ttttttatttcgtttcatgtttagaagttcttatgattatgatttttttaatgaagcttagttacacgaattttgttatatgttgcttaatgcttattag 26261543  T
Q  133 tgtttagtttttaaaatgccagtgtataattgcaaattttgtt------------tatatgattttgatatatgttg-------aatgtcgaaatttttt 213  Q
    |  ||| ||||||||||  |||||||||||||| | |||||||            ||||||||| | ||||||||||       ||||||||||||| |     
T  26261544 taattactttttaaaatttcagtgtataattgctagttttgttaaatgttgcaaatatatgattctaatatatgttggatgttgaatgtcgaaatttat- 26261642  T
Q  214 gttatatgttggatgttgaaaaatataattgttatttttattatatgttggatattgaatgttaacaaattttggtatatgatgctaatatatgactcta 313  Q
    ||||||||||| | ||||||||||||||||| || |||| ||||||| ||||  ||||||||| ||||||||||||||||| ||| |||||||| |||      
T  26261643 gttatatgttgaaagttgaaaaatataattggtaattttcttatatggtggacgttgaatgttgacaaattttggtatatgttgccaatatatgcctcct 26261742  T
Q  314 aaatttcaagttttacattt 333  Q
    |||||||||||| |||||||    
T  26261743 aaatttcaagttctacattt 26261762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 1226177 - 1226096
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgat-ttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||||    
T  1226177 ctctttcacttaatttttttttatttcgtttcatgtttagaagttcttctaattctgatttttttaatgaagtttagctaca 1226096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 349
Target Start/End: Complemental strand, 24233539 - 24233380
Alignment:
Q  192 atgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattgttatt----tttattatatgttggatattgaatgttaacaaattttg 287  Q
    |||||||||||| ||| |||| |||||||||||  || ||||||||||||||| || |    ||| || |||||||||   |||||||| ||||||||||    
T  24233539 atgttgaatgtcaaaaatttt-gttatatgttgattgctgaaaaatataattgctaatcttgtttgttgtatgttggacgatgaatgtttacaaattttg 24233441  T
Q  288 gtatatgatgctaatatatgactctaaaatttcaagttttacatttatttcagtcttcctct 349  Q
    ||||||| |||||||||||| |||  |||||||  |||  |||||| |||||||||||||||    
T  24233440 gtatatgttgctaatatatgtctcctaaatttcgggttccacattt-tttcagtcttcctct 24233380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 36059815 - 36059735
Alignment:
Q  23 ctctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| |||  ||||||| ||||||||||||||||||| | | | |||||||||| |||||||||||||||||    
T  36059815 ctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagtttagctaca 36059735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 17117555 - 17117475
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || | | |||||||||||| ||| ||| |||||||||    
T  17117555 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctgattttttaataaagcttagctaca 17117475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 4264770 - 4264680
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaat---tttatacgttgttgaatg 124  Q
    ||||||||||| |||||| ||||||||||| ||| ||||| ||||||  ||||||||||||| || ||||   ||||||||||||| ||||    
T  4264770 ttttttatttcatttcatctttagaagttcttttgattctaattttttgatgaagtttagctgcacgaatttctttatacgttgtttaatg 4264680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 6530804 - 6530874
Alignment:
Q  15 aaatttca-ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    |||||||| ||||||||||||| |||||| | ||| |||||||||||||||||| ||| ||||||||||||    
T  6530804 aaatttcatctctttcacttaattttttttaattcctttcatgtttagaagttcttttgattctgattttt 6530874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 24233731 - 24233575
Alignment:
Q  23 ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacatgaatt---ttatacgttgt 118  Q
    ||||||| ||||| |||||| |||||||| ||||||||||||||| | |||||||||||| |  ||| || ||||||||| | |||   || || || |     
T  24233731 ctctttcgcttaatttttttgatttcgttgcatgtttagaagttcttctaattctgatttgtgtatgtagcttagctacacggattttgttgtatgtggc 24233632  T
Q  119 tgaatgcttattagtgtttagtttttaaaatgccagtgtataattgcaaattttgtt 175  Q
      ||||||||||| |  ||| ||||||||||  |||||||||||||| |||||||||    
T  24233631 ataatgcttattaataattactttttaaaatttcagtgtataattgctaattttgtt 24233575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 7993778 - 7993847
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||  ||||||| ||| |||||||||||||||||| | | ||||||||||||    
T  7993778 aaatttcacatctttcacttattttttttaattcctttcatgtttagaagttcttctgattctgattttt 7993847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 9029749 - 9029811
Alignment:
Q  23 ctctttcactta--agttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||  || ||| ||||||||    
T  9029749 ctctttcacttattaattttttatttcgtttcatgtttagaagttctattgattatgattttt 9029811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 13020568 - 13020637
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| ||||||||||||  |||||  ||| |||||||||||||| ||| | ||||||||||||||    
T  13020568 aaatttcacctctttcacttaatcttttttattcctttcatgtttagaacttcttctaattctgattttt 13020637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 18676220 - 18676159
Alignment:
Q  23 ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  18676220 ctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 18676159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 36481539 - 36481610
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttat--ttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| |||||| |  ||| |||||||||||||||||| | | ||||||||||||    
T  36481539 aaatttcacctctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgattttt 36481610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 349
Target Start/End: Original strand, 9925445 - 9925602
Alignment:
Q  192 atgttgaatgtcgaaattttttgttatatgttggatgttgaaaaatataattgttatttttattatatgttggatattgaatgttaacaaattttggtat 291  Q
    |||||||||||| || ||||| |||||| |||| |||||||||||||||||||||| |||| |||||||||| |  ||||||||| |||||||| |||||    
T  9925445 atgttgaatgtccaa-tttttcgttatacgttgaatgttgaaaaatataattgttaattttgttatatgttgaacgttgaatgttgacaaatttaggtat 9925543  T
Q  292 atgatgctaatatatgact-ctaaaatttcaagttttacatttatttcagtcttcctct 349  Q
    |||  | ||||||||| || ||||| ||| | ||| || |||| |||||||||||||||    
T  9925544 atgtcgttaatatatgcctcctaaatttttaggttctaaatttttttcagtcttcctct 9925602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 26328924 - 26328859
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgat-ttttaaatgaagtttagctaca 101  Q
    ||||||||||| |||||||||||||| ||| | |||||||||| |||| |||||||||||||||||    
T  26328924 ttttttatttcttttcatgtttagaaattcttctaattctgatttttttaatgaagtttagctaca 26328859  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 55134363 - 55134443
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || ||| || ||||||||| ||| ||| |||||||||    
T  55134363 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttttgatcctgattttttaataaagcttagctaca 55134443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 41038395 - 41038464
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| ||||||| ||| |||||||||||||||||| | | ||| ||||||||    
T  41038395 aaatttcacctctttcacttaatttttttaattcctttcatgtttagaagttcttctgattttgattttt 41038464  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 9925302 - 9925358
Alignment:
Q  72 attctgatttttaaatgaagtttagctacatgaattttatacgttgttgaatgctta 128  Q
    |||||||||||| ||| ||| ||||||||| ||||||||||| ||||| ||||||||    
T  9925302 attctgattttttaataaagcttagctacacgaattttatactttgtttaatgctta 9925358  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 24449271 - 24449333
Alignment:
Q  39 ttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||| |||||||||||| |||||| | | |||||||||||| ||||||| |||| ||||    
T  24449271 ttttattttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagttaca 24449333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 27632543 - 27632613
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  27632543 aaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 27632613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 32130709 - 32130639
Alignment:
Q  15 aaatttca-ctctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    |||||||| ||||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  32130709 aaatttcatctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 32130639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 5545499 - 5545528
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttc 66  Q
    ||||||||||||||||||||||||||||||    
T  5545499 ttttttatttcgtttcatgtttagaagttc 5545528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 10387212 - 10387244
Alignment:
Q  210 ttttgttatatgttggatgttgaaaaatataat 242  Q
    ||||||||||||||| |||||||||||||||||    
T  10387212 ttttgttatatgttgaatgttgaaaaatataat 10387244  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 11088741 - 11088805
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  11088741 ttttttatttcgtttcatgtttagaagttcttctaattctgattttttaatgaagtttagctaca 11088805  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 350587 - 350652
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatt-taattctgatttttaaatgaagtttagctaca 101  Q
    |||||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||    
T  350587 ttttttatttcgtttcatgtttagaagttctttctaattctaattttttaatgaagtttagctaca 350652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 1092951 - 1092870
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctacat 102  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || ||| ||||| |||||| ||| ||| ||||||||||    
T  1092951 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttttgattctaattttttaataaagcttagctacat 1092870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 6294426 - 6294490
Alignment:
Q  39 ttttatttcgtttcatgtttagaagttcatttaattctga--tttttaaatgaagtttagctaca 101  Q
    |||||||| ||||||||||||||||||| ||| |||||||  ||||| ||||||| |||||||||    
T  6294426 ttttattttgtttcatgtttagaagttcttttgattctgattttttttaatgaagcttagctaca 6294490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 29308377 - 29308297
Alignment:
Q  23 ctctttcacttaagtttttt--atttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| || | | |||||||||||| ||| ||| ||| |||||    
T  29308377 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttatgattctgattttttaataaagcttaactaca 29308297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 30915271 - 30915191
Alignment:
Q  23 ctctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| |||  ||||||| |||||||||||| |||||| | | |||||||||||| ||||||| ||| |||||    
T  30915271 ctctttcacttaattttattttattttgtttcatgtttataagttcttctgattctgattttttaatgaagcttaactaca 30915191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 57833 - 57918
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||| |||||||||||| ||||||| ||| |||||| ||||||||||| ||| ||  |  ||||| |||||||||||||||||    
T  57833 aaatttcacctctttcacttaatttttttaattcctttcatatttagaagttcttttgatatt--ttttttaatgaagtttagctaca 57918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 2618500 - 2618569
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| ||||||| ||  ||||||||||| |||||| | | ||||||||||||    
T  2618500 aaatttcacctctttcacttaatttttttaattgctttcatgtttaaaagttcttcttattctgattttt 2618569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 1690611 - 1690547
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||| |||||||||||||||||||||| |  | | ||||||||||||  || |||||||||||||    
T  1690611 ttttgtatttcgtttcatgtttagaagcttttctgattctgatttttttataaagtttagctaca 1690547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 21596505 - 21596566
Alignment:
Q  38 tttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagcta 99  Q
    |||||||| | |||||||||||||||||| ||| |||||||||||| ||||||| |||||||    
T  21596505 tttttattacatttcatgtttagaagttcttttgattctgattttttaatgaagcttagcta 21596566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 7767220 - 7767300
Alignment:
Q  23 ctctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| |||  ||||||| |||||||||||| |||||| | | ||||||| |||| ||||||| |||||||||    
T  7767220 ctctttcacttaattttattttattttgtttcatgtttaaaagttcttctgattctgactttttaatgaagcttagctaca 7767300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 1649732 - 1649681
Alignment:
Q  40 tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaag 91  Q
    ||||||||||||||||||||||||||| | ||| || ||||||| |||||||    
T  1649732 tttatttcgtttcatgtttagaagttcttataactccgattttttaatgaag 1649681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 15998438 - 15998481
Alignment:
Q  23 ctctttcacttaagttttttatttcgtttcatgtttagaagttc 66  Q
    ||||||||||||| |||| | |||||||||||||||||||||||    
T  15998438 ctctttcacttaatttttctgtttcgtttcatgtttagaagttc 15998481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 51939474 - 51939404
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  51939474 aaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctcattctgattttt 51939404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 46904896 - 46904976
Alignment:
Q  23 ctctttcacttaagttt--tttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||||||||||| |||  ||| ||| |||||||||||| |||||| | | |||||||||||| ||||||| || ||||||    
T  46904896 ctctttcacttaattttattttgttttgtttcatgtttaaaagttcttcttattctgattttttaatgaagcttcgctaca 46904976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 40152024 - 40151960
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    |||||||||||||||||| |||| |||||  | | |||||||||||| ||||||| ||| |||||    
T  40152024 ttttttatttcgtttcatatttaaaagtttttatgattctgattttttaatgaagcttaactaca 40151960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 99086 - 99150
Alignment:
Q  37 ttttttatttcgtttcatgtttagaagttcatttaattctgatttttaaatgaagtttagctaca 101  Q
    ||||| |||||||||||||||||||||||| | | |||||||||||| |||||||  ||||||||    
T  99086 tttttaatttcgtttcatgtttagaagttcttctgattctgattttttaatgaaggctagctaca 99150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 17051 - 16962
Alignment:
Q  15 aaatttcac-tctttcacttaagttttttatttcgtttcatgtttagaagttcatttaattctgattt--ttaaatgaagtttagctaca 101  Q
    ||||||||| |||||||||||| ||||||| ||| |||||||||||||| ||| |   ||||||||||  || |||||| ||||||||||    
T  17051 aaatttcacctctttcacttaatttttttaattcctttcatgtttagaacttcttcagattctgattttatttaatgaaatttagctaca 16962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 22724 - 22654
Alignment:
Q  15 aaatttcac-tctttcacttaagtttttt-atttcgtttcatgtttagaagttcatttaattctgattttt 83  Q
    ||||||||| |||||||||||| |||||| | ||| |||||||||||||||||| | | ||||||||||||    
T  22724 aaatttcacctctttcacttaattttttttaattcctttcatgtttagaagttcttctgattctgattttt 22654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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