View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_28 (Length: 352)
Name: NF11117_low_28
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_28 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 2890490 - 2890153
Alignment:
| Q |
18 |
tatattcaaacttttgaagtattcacactgaatgtaactttaggtttatattgaaacttttgaagttggtagattacaagtaaatagattttattctaaa |
117 |
Q |
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| T |
2890490 |
tatattcaaacttttgaagtattcacactgaatgtaactttaggtttatattgaaacttttgaagttggtagattacaagtaaatagattttattctaaa |
2890391 |
T |
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| Q |
118 |
tattcacagtgtgtaacattttgttcatttatgatagaattatcggactattatatatatgttctgattataagttttgcattagattaagatttgatag |
217 |
Q |
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| T |
2890390 |
tattcacagtgtgtaactttttgttcatttatgatagaattatcggactattatatatatgttctgattataagttttgcattagattaagatttgatag |
2890291 |
T |
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| Q |
218 |
gtcgtgtgtttataattaagttgagaataccaccatcttaaaagctgattttgtaaaaattgagttagatatgaatagtatggact---ataataatttc |
314 |
Q |
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| T |
2890290 |
gtcgtgtgtttataattatgttgagaataccaccatcttaaaagctgattttgtaaaaattgagttagatatgaattgtacggactacaataataatttc |
2890191 |
T |
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| Q |
315 |
attaaagatcaaaattataaaccatctacaatcaagtt |
352 |
Q |
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| T |
2890190 |
attaaagatcaaaattataaaccatctacaatcaagtt |
2890153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 2890517 - 2890471
Alignment:
| Q |
37 |
tattcacactgaatgtaactttaggtttatattgaaacttttgaagt |
83 |
Q |
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| T |
2890517 |
tattcacactaaaggtaactttgggtttatattcaaacttttgaagt |
2890471 |
T |
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