View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_31 (Length: 332)
Name: NF11117_low_31
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 34556056 - 34556209
Alignment:
| Q |
19 |
aaaatggatatgctgacatgaaacagagaagtaaactagacatcctctgaagagtggtctgaagctcagaaccacatctcaataaagttagtcagtcagg |
118 |
Q |
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| T |
34556056 |
aaaatggatatgctgacatgaaacagagaagtaaactagacatcctctgaagagtggtctgaagctcagaaccacatctcaataaagttagtcagtcagg |
34556155 |
T |
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| Q |
119 |
cccggagatcaacacttacaaaagattcatgttttagcatggaacccacatgct |
172 |
Q |
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| T |
34556156 |
cccggagatcaacacttacaaaagattcatgttttagcatggaacccacatgct |
34556209 |
T |
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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 34556257 - 34556340
Alignment:
| Q |
219 |
tattttcaaaattcattcatagggaaatgagaagaatccctagaaagggaacatggaaaagaaccaatcaccatgccctccagt |
302 |
Q |
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| T |
34556257 |
tattttcaaaattcattcatagggaaatgagaagaatccctataaagggaacatggaaaagaaccaatcaccatgcgctccagt |
34556340 |
T |
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