View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_low_33 (Length: 325)
Name: NF11117_low_33
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_33 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 52 - 325
Target Start/End: Complemental strand, 19770126 - 19769839
Alignment:
| Q |
52 |
tcacttcggtcgaacaatacctaaacaaacaatcaaactacgaaatcaacatttatatgagatgattttccaatgtcaaaaccaaacagttt-------- |
143 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
19770126 |
tcacttcggtcgaacaacacctaaacgaacaatcaaactacgaaatcaacatttatatgagataattttccaatgtcaaaaccaaacagaattaacaatt |
19770027 |
T |
|
| Q |
144 |
------agttcaacttcatagtgaataatctgatatgataagagaagcagatataagcatcacctcaacgtttgaaattgaatcgccaccgtaatgctat |
237 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19770026 |
gaactaagctcaatttcatagtgaataatctgatatgataagagaagcagatataagcatcacctcaacgtttgaaattgaatcgccaccgtaatgctat |
19769927 |
T |
|
| Q |
238 |
ctcgaggcatggaagaatccagttgctccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatccacctcta |
325 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19769926 |
ctcgaggcatggaagaatccagatgctccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatccacctcta |
19769839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 153 - 325
Target Start/End: Complemental strand, 32524306 - 32524134
Alignment:
| Q |
153 |
tcatagtgaataatctgatatgataagagaagcagatataagcatcacctcaacgtttgaaattgaatcgccaccgtaatgctatctcgaggcatggaag |
252 |
Q |
| |
|
||||| |||||||| |||||| ||||||||| |||| |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
32524306 |
tcataatgaataatatgatatcataagagaattagatctaagcatcacctcaacgtttaaaattgaatcgtcgccgtaatgctatctcgaggcatggaag |
32524207 |
T |
|
| Q |
253 |
aatccagttgctccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatccacctcta |
325 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32524206 |
aatccaaatgctccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatctacctcta |
32524134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 18931381 - 18931434
Alignment:
| Q |
74 |
aaacaaacaatcaaactacgaaatcaacatttatatgagatgattttccaatgt |
127 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||| |||| |||| |||||||||||| |
|
|
| T |
18931381 |
aaacaaagaatcaaactacaaaatcaaaattgatatcagataattttccaatgt |
18931434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University