View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_low_34 (Length: 323)
Name: NF11117_low_34
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 41859552 - 41859257
Alignment:
| Q |
12 |
atgaatgataattttgcatggatgatcacaaagcttaatttgtaaatcattatttaggactttgaaattctgcatcacatatgtattttgttctattagg |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41859552 |
atgaatgataatcttgcatggatgatcacaaagcttaatttgtaaatcattatttaggactttgaaattctgcatcacatatgtcttttgttctattagg |
41859453 |
T |
|
| Q |
112 |
attgatccccatttggctatgtcatccttcacaattatcgcttgaattttatccccctgataacaaaaagaatcataaattaaaaccaaacatgcattta |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41859452 |
attgatccccattttgctatgtcatccttcacgattatcgcttgaattttatccccctgataacaaaaagaatcataaattaaaaccaaacatgcattta |
41859353 |
T |
|
| Q |
212 |
atcatttttattaaatcagaatgaaaaagatatttagttggagttcaccttggtatccattaaaaccatttcaagatgttgatggttattcatgtt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41859352 |
atcatttttattaaatcagaatgaaaaagatatttagttggagttcaccttggtatccattaaaaccatttcaagatgttgatggttattcatgtt |
41859257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 41887453 - 41887163
Alignment:
| Q |
12 |
atgaatgataattttgcatggatgatcacaaagcttaatttgtaaatcattatttaggactttgaaattctgcatcacatatgtattttgttctattagg |
111 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||| ||| ||||| |
|
|
| T |
41887453 |
atgaatgatcattttgcagggatggtcacaaagcttagtttgtaaatcattctttaggactttgaaattctgcatcacat--gtcttttgctctgttagg |
41887356 |
T |
|
| Q |
112 |
attgatccccatttggctatgtcatccttcacaattatcgcttgaattttatccccctgataacaaaaagaatcataaattaaaaccaaacatgcattta |
211 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
41887355 |
attgatccccagtttgctatgtcatccttcacaattatcgcttgaattttatccccctaataacaa---gaatcgtaaattaaaaccaaacatgtattta |
41887259 |
T |
|
| Q |
212 |
atcatttttattaaatcagaatgaaaaagatatttagttggagttcaccttggtatccattaaaaccatttcaagatgttgatggttattcatgtt |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41887258 |
atcattttaattaaatcagaatgaaaaagacatttagttggagttcaccttgacatccattaaaaccgtttcaagatgttgatggttattcatgtt |
41887163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 41878423 - 41878148
Alignment:
| Q |
12 |
atgaatgataattttgcatggatgatcacaaagcttaatttgtaaatcattatttaggactttgaaattctgcatcacatatgtattttgttctattagg |
111 |
Q |
| |
|
||||||||| || ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| || || ||| |
|
|
| T |
41878423 |
atgaatgatcatcttgcagggatggtcacaaagcttaaattgtaaatcattctttaggactttgaaattctgcatcacatatgtcttttgctcaatgagg |
41878324 |
T |
|
| Q |
112 |
attgatccccatttggctatgtcatccttcacaattatcgcttgaattttatccccctgataacaaaaagaatcataaattaaaaccaaacatgcattta |
211 |
Q |
| |
|
|| |||||||| || |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
41878323 |
atcgatccccactttgctatgtcatccttcacaattatcccttgaattttatccccctaataacaaaaagaagcttaaattaaaaccaagcatgcattt- |
41878225 |
T |
|
| Q |
212 |
atcatttttattaaatcagaatgaaaaagatatttagttggagttcaccttggtatccattaaaaccatttcaagatgttgatggttattcatgtt |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41878224 |
-------------------aatgaaaaaaatatttagttggagttcaccttggaatctgttaaaaccatttcaagatgttgatggttattcatgtt |
41878148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University