View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_low_37 (Length: 289)
Name: NF11117_low_37
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 49686693 - 49686952
Alignment:
| Q |
19 |
gaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686693 |
gaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgat |
49686792 |
T |
|
| Q |
119 |
ttttacttcggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686793 |
ttttacttcggtgattcaacaatatctaatgatgagcccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcac |
49686892 |
T |
|
| Q |
219 |
tttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686893 |
tttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcat |
49686952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 49690970 - 49691218
Alignment:
| Q |
27 |
acataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttactt |
126 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| || |||| |||| ||||||||||| ||||||| | |||| || ||||||||||||||| |
|
|
| T |
49690970 |
acataacagctttcaaatgcaaccatacccgaaaattaggcattcaccctccaagtaatttcttcataaatagttcttgtcatccctatgatttttactt |
49691069 |
T |
|
| Q |
127 |
cggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggt |
226 |
Q |
| |
|
|| |||| |||||| | ||||||||||||||||||||||| |||||||| | || ||||||||||||| | ||||||| ||||||||||| ||| |
|
|
| T |
49691070 |
tggcgatt---caatatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggt |
49691166 |
T |
|
| Q |
227 |
aacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcat |
278 |
Q |
| |
|
|||||||||| || ||| || |||||||||||||| | ||| ||||||||| |
|
|
| T |
49691167 |
aacccatttccctttttaactaatgaaattacctttcagttccaatcttcat |
49691218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 49679336 - 49679584
Alignment:
| Q |
27 |
acataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttactt |
126 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||| || | | || |||| ||||||||||| ||||||| | |||| || ||||||||||||||| |
|
|
| T |
49679336 |
acataacagctttcaaatgcaaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatgatttttactt |
49679435 |
T |
|
| Q |
127 |
cggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggt |
226 |
Q |
| |
|
|| |||| |||||| | ||||||||||||||||||||||| |||||||| | || ||||||||||||| | ||||||| ||||||||||| || |
|
|
| T |
49679436 |
tggcgatt---caatatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggc |
49679532 |
T |
|
| Q |
227 |
aacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcat |
278 |
Q |
| |
|
|| ||||||| ||| |||| |||| |||| |||||| | |||||| |||||| |
|
|
| T |
49679533 |
aatccatttccattcttagatgatcaaataacctttcagttcaaaccttcat |
49679584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University