View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11117_low_38 (Length: 282)
Name: NF11117_low_38
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 43260796 - 43261071
Alignment:
| Q |
1 |
cattttcattcttagtcttttcttgtatatgcatcgatgaatatagtataaattaaatcttagtagtttattggtttcaatttcagacaattgtttacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43260796 |
cattttcattcttagtcttttcttgtatatgcatcaatgaatatagtataaattaaatcttagtagtttattggtttcaatttcagacaattgtttacta |
43260895 |
T |
|
| Q |
101 |
cttctgatggtggaacccttgctttggactgggtaacgagttctgatggtatgtatattcaaatttatttataaatttgtgtttttaaaatgcatagtta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
43260896 |
cttctgatggtggaacccttgctttggactgggtaacgagttctgatggtatgtatattcaaattaatttataaatttttgtttttaaaatgcatagtta |
43260995 |
T |
|
| Q |
201 |
atttagtatcaaattagaaagccttcgatgacctttcagatttttgtgtctgattattattatgtcacaggttctg |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
43260996 |
atttagtatcaaattagaaagccttcgatgacctttcagatttttgtgtctgattattattatgttacagtttctg |
43261071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 43271039 - 43271094
Alignment:
| Q |
79 |
aatttcagacaattgtttactacttctgatggtggaacccttgctttggactgggt |
134 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
43271039 |
aatttcagacaattgtttaatactcctgatggtggaactattgctctggactgggt |
43271094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University