View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_42 (Length: 254)
Name: NF11117_low_42
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 36185289 - 36185079
Alignment:
| Q |
41 |
ttgtgttgtagctttgtaacttcttgggccattatgtgcttttggataaggaggaggagaatggaaacactgggtggtttgggtgacacttacattcttg |
140 |
Q |
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| T |
36185289 |
ttgtgttgtagctttgtaacttcttgggccattatgtgcttttggataaggaggaggagaatggaaacactgggtggtttgggtgccacttacattcttg |
36185190 |
T |
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| Q |
141 |
gcatggatgatagggaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattatgc-gggccagataaaatagtcaagcatt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36185189 |
gcatggatgatagggaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattatgcggggccagataaaatagtcaagcatt |
36185090 |
T |
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| Q |
240 |
ctgttaaaaca |
250 |
Q |
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||||||||||| |
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| T |
36185089 |
ctgttaaaaca |
36185079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 36208400 - 36208263
Alignment:
| Q |
113 |
ggtggtttgggtgacacttacattcttggcatggatgatagggaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattat |
212 |
Q |
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| T |
36208400 |
ggtggtttgggtgccagttacattcttggcatggatgatagggaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattat |
36208301 |
T |
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| Q |
213 |
gcgggccagataaaatagtcaagcattctgttaaaaca |
250 |
Q |
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| T |
36208300 |
gcgggccagataaaatagtcaagcattctgttaaaaca |
36208263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 36215031 - 36214932
Alignment:
| Q |
155 |
gaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagcta |
254 |
Q |
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| T |
36215031 |
gaacagattacgagtgcattaagagtgagagaccagagataaagtataatcggattatgcgggccagatgaaaaagtcaagcattctgtaaaaacagcta |
36214932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 36197327 - 36197228
Alignment:
| Q |
155 |
gaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagcta |
254 |
Q |
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| T |
36197327 |
gaacaaattatgagtgcactaagagtgagagaccaaggagaaaatatcattggattatgtgggccagaaaaaagagtcaagcattctgcaaaaacagcta |
36197228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 36210416 - 36210358
Alignment:
| Q |
184 |
agaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctg |
242 |
Q |
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| T |
36210416 |
agaccaaggagaaaatataatcggattatgcgggccaaaaaaaagagtcgagcattctg |
36210358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 36213764 - 36213694
Alignment:
| Q |
184 |
agaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagcta |
254 |
Q |
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| T |
36213764 |
agaccaaggagaaaatataatcggattatgcggcccggatgaaagagtaaggctttctgtaaaaacagcta |
36213694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 36202857 - 36202806
Alignment:
| Q |
184 |
agaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaag |
235 |
Q |
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| T |
36202857 |
agaccaaggagaaaacataattggattatgcgggccagatgaaagagtcaag |
36202806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 36208494 - 36208441
Alignment:
| Q |
46 |
ttgtagctttgtaacttcttgggccattatgtgcttttggataaggaggaggag |
99 |
Q |
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| T |
36208494 |
ttgtagctttgactcttcttgggtcattatgtgcttttggatacggaggaggag |
36208441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 36188928 - 36188877
Alignment:
| Q |
191 |
ggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctg |
242 |
Q |
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| T |
36188928 |
ggagaaaatataatcggattatgcgggccaaaaaaaagagtcgagcgttctg |
36188877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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