View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_47 (Length: 247)
Name: NF11117_low_47
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_47 |
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| [»] scaffold0073 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7085848 - 7086088
Alignment:
| Q |
1 |
cacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7085848 |
cacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaatctgttactcatcacatgcttgtct |
7085947 |
T |
|
| Q |
101 |
agctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7085948 |
agctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattattg |
7086047 |
T |
|
| Q |
201 |
gtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7086048 |
gtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
7086088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7045238 - 7044998
Alignment:
| Q |
1 |
cacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7045238 |
cacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacatagcctaatgcactttgaaacctgttactcatcacatgcttgtct |
7045139 |
T |
|
| Q |
101 |
agctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatcg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
7045138 |
agctttgataatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgcagtgaattattg |
7045039 |
T |
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| Q |
201 |
gtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
241 |
Q |
| |
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| T |
7045038 |
gtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
7044998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7000941 - 7000701
Alignment:
| Q |
1 |
cacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtct |
100 |
Q |
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|
|||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7000941 |
cacatcacatttctcattgacccttaagatttgacaggctagttctggtgctacataacctaaagcactttgaaacctgttactcatcacatgcttgtct |
7000842 |
T |
|
| Q |
101 |
agctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatcg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |
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| T |
7000841 |
agctttgttaatagcctagctaacccgaaatctgatatctttgcgttgaagttttcgtcaagtaagatgttgcttggttttatgttgtagtgaatgattg |
7000742 |
T |
|
| Q |
201 |
gtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
241 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
7000741 |
gtggtctgaatgaatgatgcaaatgtgcaagtccctttgct |
7000701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7046812 - 7046572
Alignment:
| Q |
1 |
cacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtct |
100 |
Q |
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|
|||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7046812 |
cacatcacatttctcattgacccttaagatttgacaggctagttctggtgctacataacctaaagcactttgaaacctgttactcatcacatgcttgtct |
7046713 |
T |
|
| Q |
101 |
agctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatcg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |
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| T |
7046712 |
agctttgttaatagcctagctaacccgaaatctgatatctttgcgttgaagttttcgtcaagtaagatgttgcttggttttatgttgtagtgaatgattg |
7046613 |
T |
|
| Q |
201 |
gtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
241 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
7046612 |
gtggtctgaatgaatgatgcaaatgtgcaagtccctttgct |
7046572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 6995555 - 6995609
Alignment:
| Q |
17 |
ttgacccttaagctctgacaagctagttcaggtgctacataacctaatgcacttt |
71 |
Q |
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|||||||||||||||||||||| || ||||| || |||||| |||||||||||| |
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| T |
6995555 |
ttgacccttaagctctgacaagataattcagtggccacataatctaatgcacttt |
6995609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14071 - 13831
Alignment:
| Q |
1 |
cacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacataacctaatgcactttgaaacctgttactcatcacatgcttgtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14071 |
cacatcacatttctcattgacccttaagctctgacaagctagttcaggtgctacatagcctaatgcactttgaaacctgttactcatcacatgcttgtct |
13972 |
T |
|
| Q |
101 |
agctttgttaatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgtagtgaattatcg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
13971 |
agctttgataatagcctagctaatccgaaatctgatatcttagcgttgaagttttcatcaagtaagatgttgcttggttttatgttgcagtgaattattg |
13872 |
T |
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| Q |
201 |
gtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
13871 |
gtggcctgaatgaatgatgcaaatgtgcaagtccctttgct |
13831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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