View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_48 (Length: 242)
Name: NF11117_low_48
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_48 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 7085385 - 7085609
Alignment:
| Q |
18 |
gaagccacaagtaacagtttttgagatatctgcaatgacaacataactacaattgtggctgaaattttactgtgtttttctacagtccaatggttcaaag |
117 |
Q |
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| T |
7085385 |
gaagccacaagtaacagtttttgagatatctgcaatgacaacaaaactacaattgtggctgaaattttactgtgtttttctacagtccaatggttcaaag |
7085484 |
T |
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| Q |
118 |
tgtaattgcgaccgcagtttataaccactgaaaatagctaaacatataagcgtattaatctcatcaaaatacttccatcctttgaggaacaggagtttta |
217 |
Q |
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| T |
7085485 |
tgtaattgcgaccgcagtttataaccactgaaaatagctaaacatataagcgtattaatgtcatcaaaatacttccatcctttgaggaacaggagtttta |
7085584 |
T |
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| Q |
218 |
atgacctgcaatatttgcacaactt |
242 |
Q |
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| T |
7085585 |
atgacctgcaatatttgcacaactt |
7085609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 7001402 - 7001180
Alignment:
| Q |
18 |
gaagccacaagtaacagtttttgagatatctgcaatgacaacataactacaattgtggctgaaattttactgtgtttttctacagtccaatggttcaaag |
117 |
Q |
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| T |
7001402 |
gaagccacaagtaacagtttttaagataactgcaatgacaacaaaactacaattgtggttgaa--tctactgtgtttctcagaagtacaaaggttcaatg |
7001305 |
T |
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| Q |
118 |
tgtaattgcgaccgcagtttataaccactgaaaatagctaaacatataagcgtattaatctcatcaaaatacttccatcctttgaggaacaggagtttta |
217 |
Q |
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| T |
7001304 |
tgtaattgtgaccgcagtttaaaaccactgaaaatagctaaacatatatgcgtattagtgtcatcaaaatacttccatcctttgaggaacagaagtttta |
7001205 |
T |
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| Q |
218 |
atgacctgcaatatttgcacaactt |
242 |
Q |
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| T |
7001204 |
atgacctgcaatatttgcacaactt |
7001180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 7047273 - 7047051
Alignment:
| Q |
18 |
gaagccacaagtaacagtttttgagatatctgcaatgacaacataactacaattgtggctgaaattttactgtgtttttctacagtccaatggttcaaag |
117 |
Q |
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| T |
7047273 |
gaagccacaagtaacagtttttaagataactgcaatgacaacaaaactacaattgtggttgaa--tctactgtgtttctcagaagtacaaaggttcaatg |
7047176 |
T |
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| Q |
118 |
tgtaattgcgaccgcagtttataaccactgaaaatagctaaacatataagcgtattaatctcatcaaaatacttccatcctttgaggaacaggagtttta |
217 |
Q |
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| T |
7047175 |
tgtaattgtgaccgcagtttaaaaccactgaaaatagctaaacatatatgcgtattagtgtcatcaaaatacttccatcctttgaggaacagaagtttta |
7047076 |
T |
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| Q |
218 |
atgacctgcaatatttgcacaactt |
242 |
Q |
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| T |
7047075 |
atgacctgcaatatttgcacaactt |
7047051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 6995172 - 6995296
Alignment:
| Q |
117 |
gtgtaattgcgaccgcagtttataaccactgaaaatagctaaacatataagcgtattaatctcatcaaaatacttccatcctttgaggaacaggagtttt |
216 |
Q |
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||||||||||||||||| |||| ||||||||||| |||||||||||||| | ||||||||||||||||||||||| || |||||||||||| || |||| |
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| T |
6995172 |
gtgtaattgcgaccgcaatttaaaaccactgaaagtagctaaacatatagtcatattaatctcatcaaaatacttctat-ctttgaggaacatgaatttt |
6995270 |
T |
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| Q |
217 |
aatgacctgcaatatttgcacaactt |
242 |
Q |
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| T |
6995271 |
agcgacctgcaatatttgaacaactt |
6995296 |
T |
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