View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11117_low_5 (Length: 708)

Name: NF11117_low_5
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11117_low_5
NF11117_low_5
[»] chr3 (6 HSPs)
chr3 (450-695)||(22346272-22346524)
chr3 (199-307)||(22345942-22346050)
chr3 (310-397)||(22346129-22346216)
chr3 (20-104)||(22345760-22345844)
chr3 (50-106)||(7414750-7414806)
chr3 (62-98)||(31734134-31734170)
[»] chr2 (1 HSPs)
chr2 (33-95)||(10734557-10734619)
[»] chr8 (1 HSPs)
chr8 (37-98)||(9050040-9050101)
[»] chr6 (3 HSPs)
chr6 (22-87)||(5933212-5933277)
chr6 (48-98)||(23585692-23585742)
chr6 (40-97)||(3165489-3165546)
[»] chr5 (3 HSPs)
chr5 (39-80)||(28187453-28187494)
chr5 (48-87)||(27146131-27146170)
chr5 (50-87)||(10809535-10809572)
[»] chr1 (2 HSPs)
chr1 (32-87)||(3078905-3078960)
chr1 (37-68)||(46344013-46344044)
[»] chr7 (1 HSPs)
chr7 (50-94)||(5066366-5066410)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 450 - 695
Target Start/End: Original strand, 22346272 - 22346524
Alignment:
Q  450 gcaaggttcatagttcatacctatcaaacagaagaagagaaacagtatgcaagtgcttcaagcacaaagcatttcaacacttgc-------tcatcattg 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||          |||||||||    
T  22346272 gcaaggttcatagttcatacctatcaaacagaagaagagaaacagtatgcaagtgcttcaagcacaaaacatttcaacactcaaagacacatcatcattg 22346371  T
Q  543 ttcaatataaaaaatgtaaagagatgaattaatgtttatgaaagagtgagaatttattaataagagagatacaatgcaatctatgtcactatttaagtgc 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22346372 ttcaatataaaaaatgtaaagagatgaattaatgtttatgaaagagtgagaatttattaataagagagatacaatgcaatctatgtcactatttaagtgc 22346471  T
Q  643 aatctaagcattaacacactcagtttatctctgactctttctcactctgtgct 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22346472 aatctaagcattaacacactcagtttatctctgactctttctcactctgtgct 22346524  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 22345942 - 22346050
Alignment:
Q  199 caaccaaaataaaccctagtctatgaacctagtttataggcaagtgacaacataacaagacacagaaacatccttttatagagaaaaacattctacacac 298  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22345942 caaccaaaataaaccctagtctatgaacctagtatataggcaagtgacaacataacaagacacagaaacatccttttatagagaaaaacattctacacac 22346041  T
Q  299 tatcactag 307  Q
    || ||||||    
T  22346042 taccactag 22346050  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 22346129 - 22346216
Alignment:
Q  310 caagccatttttccaattaaaatccattactatcatttcaaattttgatctcaaaatagaaaaaattgttataaaatttcaacaatct 397  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  22346129 caagccatttttccaattaaaatccattactaccatttcaaattttgatctcaaaatagaaaaaaatgttataaaaattcaacaatct 22346216  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 22345760 - 22345844
Alignment:
Q  20 atgccacagtggttttcacaaaaattacactttgaagctttaacaaaatcacggtgtcactgtgatttagtcaaactcatggtga 104  Q
    ||||||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  22345760 atgccactgtggttttgacaaaaattacacttcgaagcttcaacaaaatcacggtgtcacagtgatttagtcaaactcacggtga 22345844  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 7414750 - 7414806
Alignment:
Q  50 tttgaagctttaacaaaatcacggtgtcactgtgatttagtcaaactcatggtgatt 106  Q
    ||||||| || ||||||||||  |||| |||||||||| ||||||||||| ||||||    
T  7414750 tttgaagtttcaacaaaatcagagtgttactgtgattttgtcaaactcattgtgatt 7414806  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 31734170 - 31734134
Alignment:
Q  62 acaaaatcacggtgtcactgtgatttagtcaaactca 98  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  31734170 acaaaatcactgtgtcgctgtgatttagtcaaactca 31734134  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 10734619 - 10734557
Alignment:
Q  33 tttcacaaaaattacactttgaagctttaacaaaatcacggtgtcactgtgatttagtcaaac 95  Q
    |||| |||||| | ||||||| ||||| |||||||||||||||||| |||||||| |||||||    
T  10734619 tttcgcaaaaactgcactttggagcttcaacaaaatcacggtgtcattgtgattttgtcaaac 10734557  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 9050040 - 9050101
Alignment:
Q  37 acaaaaattacactttgaagctttaacaaaatcacggtgtcactgtgatttagtcaaactca 98  Q
    ||||||| ||||||||| || || |||||||| || ||||||||||||||| ||||||||||    
T  9050040 acaaaaactacactttggagtttcaacaaaatgaccgtgtcactgtgatttcgtcaaactca 9050101  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 5933277 - 5933212
Alignment:
Q  22 gccacagtggttttcacaaaaattacactttgaagctttaacaaaatcacggtgtcactgtgattt 87  Q
    ||||| ||| |||| |||||||||| |||||| ||||||||||||||||| |||| || |||||||    
T  5933277 gccactgtgattttgacaaaaattatactttgtagctttaacaaaatcacagtgttaccgtgattt 5933212  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 23585742 - 23585692
Alignment:
Q  48 actttgaagctttaacaaaatcacggtgtcactgtgatttagtcaaactca 98  Q
    |||||||| ||| |||||||||| | |||||||||||||| ||||||||||    
T  23585742 actttgaaacttcaacaaaatcatgttgtcactgtgattttgtcaaactca 23585692  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 3165546 - 3165489
Alignment:
Q  40 aaaattacactttgaagctttaacaaaatcacggtgtcactgtgatttagtcaaactc 97  Q
    |||||| ||||||  ||||||||||||||||||||||||   |||||| |||||||||    
T  3165546 aaaatttcacttttgagctttaacaaaatcacggtgtcatcatgattttgtcaaactc 3165489  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 28187494 - 28187453
Alignment:
Q  39 aaaaattacactttgaagctttaacaaaatcacggtgtcact 80  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  28187494 aaaaattacactttcaagctttaacaaaatcacggtgccact 28187453  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 27146170 - 27146131
Alignment:
Q  48 actttgaagctttaacaaaatcacggtgtcactgtgattt 87  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  27146170 actttggagctttaacaaaatcatggtgtcactgtgattt 27146131  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 10809572 - 10809535
Alignment:
Q  50 tttgaagctttaacaaaatcacggtgtcactgtgattt 87  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  10809572 tttgaagcttcaacaaaatcacggtgtccctgtgattt 10809535  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 3078960 - 3078905
Alignment:
Q  32 ttttcacaaaaattacactttgaagctttaacaaaatcacggtgtcactgtgattt 87  Q
    |||| ||||||||||||||||||||||| |||| ||||| | || |||||||||||    
T  3078960 ttttgacaaaaattacactttgaagcttcaacagaatcatgatggcactgtgattt 3078905  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 46344013 - 46344044
Alignment:
Q  37 acaaaaattacactttgaagctttaacaaaat 68  Q
    ||||||||||||||||||||||||||||||||    
T  46344013 acaaaaattacactttgaagctttaacaaaat 46344044  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 5066410 - 5066366
Alignment:
Q  50 tttgaagctttaacaaaatcacggtgtcactgtgatttagtcaaa 94  Q
    |||||||||| ||||||||||| |||||||| |||||| ||||||    
T  5066410 tttgaagcttcaacaaaatcacagtgtcactctgattttgtcaaa 5066366  T

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