View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_52 (Length: 238)
Name: NF11117_low_52
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29638602 - 29638824
Alignment:
| Q |
1 |
tggaaaacacattaggattaattcgaaattggcttgaagttccaaaagatgtgacatcaaatatactgaaattgcttggtgctgttgacctagtgatgaa |
100 |
Q |
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| T |
29638602 |
tggaaaacacattaggattaattcgaaattggcttgaagttccaaaagatgtgacatcaaatatactcaaattgcttggtgctgttgacctagtgatgaa |
29638701 |
T |
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| Q |
101 |
tgcacgtcaagtgtgtcctatgtggagggaaatttgtagggaacctctcatgtggaggagcattgaaatgatcaatggtctccattcaccacataacttg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638702 |
tgcacgtctagtgtgtcctatgtggagggaaatttgtagggatcctctcatgtggaagagcattgaaatgatcaatggtctccattcaccacataacttg |
29638801 |
T |
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| Q |
201 |
gagaagatttgtatgtatgctgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
29638802 |
gagaagatttgtatgtatgctgt |
29638824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29646547 - 29646769
Alignment:
| Q |
1 |
tggaaaacacattaggattaattcgaaattggcttgaagttccaaaagatgtgacatcaaatatactgaaattgcttggtgctgttgacctagtgatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29646547 |
tggaaaacacattaggattaattcgaaattggcttgaaattccaaaagatgtgacatcaaatatactcaaattgcttggtgctgttgacctagtgatgaa |
29646646 |
T |
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| Q |
101 |
tgcacgtcaagtgtgtcctatgtggagggaaatttgtagggaacctctcatgtggaggagcattgaaatgatcaatggtctccattcaccacataacttg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29646647 |
tgcacgtctagtgtgtcctatgtggagggaaatttgtagggatcctctcatgtggaagagcattgaaatgatcaatggtctccattcaccacataacttg |
29646746 |
T |
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| Q |
201 |
gagaagatttgtatgtatgctgt |
223 |
Q |
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| T |
29646747 |
gagaagatttgtatgtatgctgt |
29646769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29636204 - 29636237
Alignment:
| Q |
1 |
tggaaaacacattaggattaattcgaaattggct |
34 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
29636204 |
tggaaaacacagtaggattaattcgaaattggct |
29636237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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