View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_59 (Length: 202)
Name: NF11117_low_59
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 6180878 - 6180706
Alignment:
| Q |
12 |
caaagggggtggattttgatcaatatgctggctatgtaactgttgattcaaaaggagggagagaacttttctactactttgtagaatcacctctaaattc |
111 |
Q |
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| T |
6180878 |
caaaaggggtggattttgatcaatatgctggctatgtaactgttgattcaaaaggagggagagaacttttctactactttgtagaatcatctctaaattc |
6180779 |
T |
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| Q |
112 |
ttccacaaagcctcttattctatggttaaatggaggtaattaatcaatagatacattttgtttgtacatgtta |
184 |
Q |
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| T |
6180778 |
ttccacaaagcctcttattctatggttaaatggaggtaattaatcaatagatacattttgtttgtacatgtta |
6180706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 6211074 - 6210935
Alignment:
| Q |
12 |
caaagggggtggattttgatcaatatgctggctatgtaactgttgattcaaaaggagggagagaacttttctactactttgtagaatcacctctaaattc |
111 |
Q |
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| T |
6211074 |
caaaaggggtgaattttgatcaatatgctggctatataactgtggatgccaaagctaggagaaaacttttctactactttgttgaatctccttcaaattc |
6210975 |
T |
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| Q |
112 |
ttccacaaagcctcttattctatggttaaatggaggtaat |
151 |
Q |
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| T |
6210974 |
ttccacaaagcctctcgttctatggctaaatggaggtaat |
6210935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 6216927 - 6216788
Alignment:
| Q |
12 |
caaagggggtggattttgatcaatatgctggctatgtaactgttgattcaaaaggagggagagaacttttctactactttgtagaatcacctctaaattc |
111 |
Q |
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| T |
6216927 |
caaaaggggtgaattttgatcaatatgctggctatataactgtggatgccaaagctaggagaaaacttttctactactttgttgaatctccttcaaattc |
6216828 |
T |
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| Q |
112 |
ttccacaaagcctcttattctatggttaaatggaggtaat |
151 |
Q |
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|||||| ||||||||| |||||||| |||||||||||||| |
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| T |
6216827 |
ttccacgaagcctcttgttctatggctaaatggaggtaat |
6216788 |
T |
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