View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11117_low_6 (Length: 695)
Name: NF11117_low_6
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11117_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 632; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 17 - 676
Target Start/End: Original strand, 50389471 - 50390130
Alignment:
| Q |
17 |
cataggttggccatattgttttcttcatatgcaataagtcaacattagaaacgaataagggcgccaatattggttttaaacaacttgctccatctcattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50389471 |
cataggttggccatattgttttcttcatatgcaataagtcaacattagaaacgaataagggcaccaatattggttttaaacaacttgctccatctcattt |
50389570 |
T |
|
| Q |
117 |
atacaatagcacttctacttctataagtgccaacaaaagtgctagctattgcaaatttgcttgcaatccaagtaaatatggcaattggtgttcatgattg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389571 |
atacaatagcacttctacttctataagtgccaacaaaagtgctagctattgcaaatttgcttgcaatccaagtaaatatggcaattggtgttcatgattg |
50389670 |
T |
|
| Q |
217 |
gggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctgccggagccacctacatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389671 |
gggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctgccggagccacctacatg |
50389770 |
T |
|
| Q |
317 |
ttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattttggtagcaatgttggta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389771 |
ttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattttggtagcaatgttggta |
50389870 |
T |
|
| Q |
417 |
tccttgcaggactaatcaacgaaatctctccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttcatgatttggttatccat |
516 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389871 |
tccttgcaggactaatcaacgaaatctctccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttcatgatttggttatccat |
50389970 |
T |
|
| Q |
517 |
aacnnnnnnnnttgcaagaccacatgtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaacaccggttcacttgttact |
616 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389971 |
aacaaaaaaaattgcaagaccacatgtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaacaccggttcacttgttact |
50390070 |
T |
|
| Q |
617 |
tgtgttaagaatttccccgaatctcgcggagctgttttgggaattctaaaaggatatctt |
676 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390071 |
tgtgttaagaatttccccgaatctcgcggagctgttttgggaattctaaaaggatatctt |
50390130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 200 - 669
Target Start/End: Original strand, 50392928 - 50393397
Alignment:
| Q |
200 |
attggtgttcatgattggggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctg |
299 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||| | || | |
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|
| T |
50392928 |
attggtgttcacggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcctttcttatcatggcagcag |
50393027 |
T |
|
| Q |
300 |
ccggagccacctacatgttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattt |
399 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50393028 |
ccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagcacactaaacctccttagttttttcaaagattt |
50393127 |
T |
|
| Q |
400 |
tggtagcaatgttggtatccttgcaggactaatcaacgaaatctctccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttc |
499 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||| || || ||||||||||| |
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|
| T |
50393128 |
tggtagcaacgttggtgtccttgcaggactagtcaacgaactctatccaccttgggtagttttaacaataggtgctatactaaacttttttggttacttt |
50393227 |
T |
|
| Q |
500 |
atgatttggttatccataacnnnnnnnnttgcaagaccacatgtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaaca |
599 |
Q |
| |
|
|||||||||||||| | || | ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
50393228 |
atgatttggttatcagtcaccaaaaaaatagcaagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaaca |
50393327 |
T |
|
| Q |
600 |
ccggttcacttgttacttgtgttaagaatttccccgaatctcgcggagctgttttgggaattctaaaagg |
669 |
Q |
| |
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| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
50393328 |
ctggttcacttgtgacttgtgttaagaatttccctgaatctcgcggagcggttttgggaattcttaaagg |
50393397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 200 - 669
Target Start/End: Original strand, 50384509 - 50384978
Alignment:
| Q |
200 |
attggtgttcatgattggggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctg |
299 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||| | || | |
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|
| T |
50384509 |
attggtgttcatggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcctttctaatcatggcagcag |
50384608 |
T |
|
| Q |
300 |
ccggagccacctacatgttcggtctatactccagcgacataaaagaaacacttggctatgaccaaagcacactagacctccttagttttttcaaagattt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| || |
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|
| T |
50384609 |
ccggagccacctacatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagtacactgaacctccttagttttttcaaagactt |
50384708 |
T |
|
| Q |
400 |
tggtagcaatgttggtatccttgcaggactaatcaacgaaatctctccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttc |
499 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||| |
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|
| T |
50384709 |
tggtagcaacgttggtgtcctttcaggactaatcaacgaactctatccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttc |
50384808 |
T |
|
| Q |
500 |
atgatttggttatccataacnnnnnnnnttgcaagaccacatgtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaaca |
599 |
Q |
| |
|
|||||||||||||| | || | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
50384809 |
atgatttggttatcagttaccaaaaaaatagcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaaca |
50384908 |
T |
|
| Q |
600 |
ccggttcacttgttacttgtgttaagaatttccccgaatctcgcggagctgttttgggaattctaaaagg |
669 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| |
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|
| T |
50384909 |
ctggttcacttgtgacttgtgttaagaatttccctgaatctcgcggcgcggttttgggaattcttaaagg |
50384978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 542 - 669
Target Start/End: Original strand, 50406883 - 50407010
Alignment:
| Q |
542 |
gtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaacaccggttcacttgttacttgtgttaagaatttccccgaatctc |
641 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
50406883 |
gtttggcaaatgtgtctttacatttgtataggtgctaattctcagtctttttcaaacactggttcacttgttacttgtgttaagaatttccccgaaactc |
50406982 |
T |
|
| Q |
642 |
gcggagctgttttgggaattctaaaagg |
669 |
Q |
| |
|
| || | ||| ||||| ||| ||||||| |
|
|
| T |
50406983 |
gtggtgttgtgttggggattttaaaagg |
50407010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 50406581 - 50406671
Alignment:
| Q |
240 |
tccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctgccggagccacctacatgttcggtctatactc |
330 |
Q |
| |
|
||||||| ||||| ||||| ||||| || | ||||| || |||||||||||||| ||| | ||||||||||||||||| ||||| ||||| |
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|
| T |
50406581 |
tccaagttatcacaggacgatggttcgtggtgtttgcttcttttctaatcatgtcagcttcaggagccacctacatgtttggtctttactc |
50406671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 633
Target Start/End: Original strand, 41333951 - 41334042
Alignment:
| Q |
542 |
gtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaacaccggttcacttgttacttgtgttaagaatttccc |
633 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||||||| ||||| | ||||| ||| | | ||||||||||||||||||||||| |
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|
| T |
41333951 |
gtttggcaaatgtgtctttatatttgcattggtgcaaattctcaaacttttactaacacaggtgctttagttacttgtgttaagaatttccc |
41334042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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