View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11117_low_8 (Length: 602)

Name: NF11117_low_8
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11117_low_8
NF11117_low_8
[»] chr3 (5 HSPs)
chr3 (1-602)||(30407209-30407801)
chr3 (43-79)||(23631319-23631355)
chr3 (272-315)||(30403509-30403552)
chr3 (5-82)||(30403234-30403312)
chr3 (26-82)||(27213970-27214026)
[»] chr8 (2 HSPs)
chr8 (8-82)||(13177770-13177845)
chr8 (12-81)||(515139-515209)
[»] chr7 (1 HSPs)
chr7 (11-82)||(29414661-29414733)
[»] chr1 (1 HSPs)
chr1 (26-82)||(11818188-11818244)
[»] chr6 (1 HSPs)
chr6 (5-82)||(7984596-7984674)
[»] chr5 (1 HSPs)
chr5 (1-82)||(37447243-37447324)
[»] chr2 (2 HSPs)
chr2 (3-79)||(31633476-31633553)
chr2 (45-82)||(1575035-1575072)
[»] chr4 (1 HSPs)
chr4 (15-82)||(10097942-10098010)


Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Original strand, 30407209 - 30407801
Alignment:
Q  1 aagtatccaaaagtagtaatttttaattggaaattatatagatatgactttt-acacgtttttaacttgtattttcaagacaannnnnnnnng--agttc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||         |  |||||    
T  30407209 aagtatccaaaagtagtaatttttaattggaaattatatagatatgactttttacatgtttttaacttgtattttcaagacaatttttttttgtgagttc 30407308  T
Q  98 attaaacaatgtcaataagacacttattagaaagatccttatttta-tacccctttatccaagttatagaagnnnnnnnncacataattttaatatcaaa 196  Q
    |||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||        ||||||||| ||||||||||    
T  30407309 attaaacaatgtcattaagacatttattagcaagatccttattttaatacccctttatccaaattatagaaggaaaaaaacacataattgtaatatcaaa 30407408  T
Q  197 atgagtgaaattcaaaagacaaatgtattaagtaagaaagtctttttagtcaagnnnnnnnnnnnnnnnnnnnnngtcttttgctcaatatatattttaa 296  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||                     |||||||||     |||||||||||    
T  30407409 atgagtgaaattcaaaagacaaacgtattaagtaagaaagtctttttagtcaagaaaataaaataaaataaaaaggtcttttgc-----atatattttaa 30407503  T
Q  297 aagtagctgtcaagacaaacatgatcttgttttatccttctccacagtcaaacaaagtactttaaaagaa-gaacatataacatgacatcttcacacaac 395  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||| ||||||||||||    
T  30407504 aagtagctgtcaagacaaacatgttcttgttttatccttctccacagtctaacaaagtactttaaaaaaaagaacacataacatgacttcttcacacaac 30407603  T
Q  396 aacaattgcgttgacttggtagtcatatcctaacttttcgtttgtggaaaacttgttgttttcacactttcacaattttttattctctttaatttcaagg 495  Q
    |||| ||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30407604 aacagttgcgttg---------tcatatcctaacttttcgtttgtggaaaacttgttgttttcacactttcacaattttttattctctttaatttcaagg 30407694  T
Q  496 cattgcttatacagacttatttgtgtcaaattgaaaaagtctagtatacttgtagctgctcttctggttgcattgagagacaatccaaaagttctttgtt 595  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30407695 cattacttatacagacttatttgtgtcaaattgaaaaagtctagtatacttgtagctgctcttctggttgcattgagagacaatccaaaagttctttgtt 30407794  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 23631355 - 23631319
Alignment:
Q  43 tatgacttttacacgtttttaacttgtattttcaaga 79  Q
    |||||||||||||||| ||||||||||||||||||||    
T  23631355 tatgacttttacacgtgtttaacttgtattttcaaga 23631319  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 30403509 - 30403552
Alignment:
Q  272 gtcttttgctcaatatatattttaaaagtagctgtcaagacaaa 315  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||    
T  30403509 gtctttttcgcaatatatattttaaaagtagctgtgaagacaaa 30403552  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 30403234 - 30403312
Alignment:
Q  5 atccaaaagtagtaattttta-attggaaattatatagatatgacttttacacgtttttaacttgtattttcaagacaa 82  Q
    ||||||||||| ||| ||||| ||| |||||| ||||  ||||||||||||| || | ||||||||| |||||||||||    
T  30403234 atccaaaagtaataacttttacattagaaattgtataattatgacttttacatgtgtctaacttgtagtttcaagacaa 30403312  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 27213970 - 27214026
Alignment:
Q  26 attggaaattatatagatatgacttttacacgtttttaacttgtattttcaagacaa 82  Q
    |||||||||| ||||| |||||||||||||  | ||| ||||||||||| |||||||    
T  27213970 attggaaattgtatagttatgacttttacatatgtttgacttgtatttttaagacaa 27214026  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 13177770 - 13177845
Alignment:
Q  8 caaaagtagtaattttta-attggaaattatatagatatgacttttacacgtttttaacttgtattttcaagacaa 82  Q
    |||||||||||| ||||| |||||||||||| ||| ||||||||||||| || ||| |||||||||||||||||||    
T  13177770 caaaagtagtaacttttatattggaaattatgtagttatgacttttacatgtgtttgacttgtattttcaagacaa 13177845  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 515139 - 515209
Alignment:
Q  12 agtagtaatttttaa-ttggaaattatatagatatgacttttacacgtttttaacttgtattttcaagaca 81  Q
    ||||||||||||||| ||||||||| | ||| |||||||||||||  | ||| ||||||||||||||||||    
T  515139 agtagtaatttttaaattggaaattgtgtagttatgacttttacatatatttgacttgtattttcaagaca 515209  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 29414733 - 29414661
Alignment:
Q  11 aagtagtaattttta-attggaaattatatagatatgacttttacacgtttttaacttgtattttcaagacaa 82  Q
    ||||||||||||||| |||| ||||| ||||| ||||||||||||| || ||| |||||||||||||||||||    
T  29414733 aagtagtaatttttacattgaaaattgtataggtatgacttttacatgtatttgacttgtattttcaagacaa 29414661  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 11818244 - 11818188
Alignment:
Q  26 attggaaattatatagatatgacttttacacgtttttaacttgtattttcaagacaa 82  Q
    |||| ||||| ||||| ||||||||||||| |||||| |||||||||||||||||||    
T  11818244 attgaaaattgtatagttatgacttttacatgtttttgacttgtattttcaagacaa 11818188  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 7984674 - 7984596
Alignment:
Q  5 atccaaaagtagtaattttta-attggaaattatatagatatgacttttacacgtttttaacttgtattttcaagacaa 82  Q
    |||||||||||| || ||||| |||| ||||| | ||| ||||||||||||| || ||| |||||||||||||||||||    
T  7984674 atccaaaagtagcaaattttacattgaaaattttgtagttatgacttttacatgtgtttgacttgtattttcaagacaa 7984596  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 37447243 - 37447324
Alignment:
Q  1 aagtatccaaaagtagtaatttttaattggaaattatatagatatgacttttacacgtttttaacttgtattttcaagacaa 82  Q
    ||||||| |||||||||||| |||||||| |||||||  || ||||| ||||| | || ||| |||| ||||||||||||||    
T  37447243 aagtatctaaaagtagtaatatttaattgaaaattatgcagttatgaattttatatgtgtttgacttatattttcaagacaa 37447324  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 31633476 - 31633553
Alignment:
Q  3 gtatccaaaagtagtaattttta-attggaaattatatagatatgacttttacacgtttttaacttgtattttcaaga 79  Q
    |||||||||| |||||||||||| |||||||||| | ||| |||| ||||||||  | ||| ||||||||||||||||    
T  31633476 gtatccaaaattagtaatttttacattggaaattgtgtagttatgccttttacatatgtttgacttgtattttcaaga 31633553  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 1575035 - 1575072
Alignment:
Q  45 tgacttttacacgtttttaacttgtattttcaagacaa 82  Q
    ||||||||||| || |||||||||||||||||||||||    
T  1575035 tgacttttacatgtgtttaacttgtattttcaagacaa 1575072  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 10097942 - 10098010
Alignment:
Q  15 agtaattttta-attggaaattatatagatatgacttttacacgtttttaacttgtattttcaagacaa 82  Q
    ||||||||||| |||| ||||| ||||| ||||||||||||| || |||  ||| ||||||||||||||    
T  10097942 agtaatttttatattgaaaattgtatagttatgacttttacatgtatttgccttatattttcaagacaa 10098010  T

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