View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11117_low_9 (Length: 588)

Name: NF11117_low_9
Description: NF11117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11117_low_9
NF11117_low_9
[»] chr4 (2 HSPs)
chr4 (19-402)||(4720878-4721255)
chr4 (397-503)||(4720377-4720484)
[»] chr7 (4 HSPs)
chr7 (36-110)||(10597406-10597480)
chr7 (20-111)||(21923668-21923758)
chr7 (41-110)||(5678005-5678075)
chr7 (41-110)||(5703057-5703127)
[»] chr8 (2 HSPs)
chr8 (420-482)||(22494812-22494873)
chr8 (422-482)||(9428881-9428940)
[»] chr5 (1 HSPs)
chr5 (17-110)||(30808585-30808678)
[»] scaffold0007 (1 HSPs)
scaffold0007 (508-553)||(251417-251462)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 4721255 - 4720878
Alignment:
Q  19 ctcaagtctgtatgtgcgagaggtggattgtgtgcaaaatatgggtgaatgagattgtaccttgatcatgatgctgagtcacacttatatagttggggat 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |  |    
T  4721255 ctcaagtctgtatgtgcgagaggtggattgtgtgcaaaaaatgggtgaatgagattgtactttgatcatgatgttgagtcacacttatatagtcgag--t 4721158  T
Q  119 atgttgataactgcctctaggttttgaaagcggttagagatgattctgatggctaggattaatcctgacgcgctccagcactgcaatacgcacagggctt 218  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4721157 atgttgataactgcctctaggttttgaaagccgctagagatgattctgacggctaggattaatcctgacgcgctccagcactgcaatacgcacagggctt 4721058  T
Q  219 cccgtgcaccttcgtggtgcttttctttgaagaatatgtgccttgtcttcattgggatattcattcacacttggccttatgccggtttggtttggaacaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  4721057 cccgtgcaccttcgtggtgcttttctttgaagaatatgtgccttgtcttcattgggata----ttcacacttggccttatgccggtttggtttggaacaa 4720962  T
Q  319 ctttcatttgcaaattgcaagtaccgtgcatggaatctgctgttgataggggcaagtcttgatcattttcacgtattctttttt 402  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  4720961 ctttcatttgcaaattgcaagtaccgtgcatggaatctgttgttgataggggcaagtcttgatcattttcacgtattatttttt 4720878  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 397 - 503
Target Start/End: Complemental strand, 4720484 - 4720377
Alignment:
Q  397 ttttttatggaccaaataacaattggaaaattgttgttgacacttaaaataaaggttgaaaaacaccagtaaaatatgtaaata-tccctcagtagttaa 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||  ||||| ||||||||    
T  4720484 ttttttatggaccaaataacaattggaaaattgttgttgacacttaacataaaggttgaaaaacaccagtaaaatacataaataccccctcggtagttaa 4720385  T
Q  496 ccatcaaa 503  Q
    ||| ||||    
T  4720384 ccaccaaa 4720377  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 10597406 - 10597480
Alignment:
Q  36 gagaggtggattgtgtgcaaaatatgggtgaatgagattgtaccttgatcatgatgctgagtcacacttatatag 110  Q
    |||||||||||||||||| |||| ||||||||||| | |||||||||| | ||| |||||||||| |||||||||    
T  10597406 gagaggtggattgtgtgcgaaatttgggtgaatgaaagtgtaccttgagcgtgacgctgagtcacgcttatatag 10597480  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 21923668 - 21923758
Alignment:
Q  20 tcaagtctgtatgtgcgagaggtggattgtgtgcaaaatatgggtgaatgagattgtaccttgatcatgatgctgagtcacacttatatagt 111  Q
    ||||||| |||| ||  ||||||||||||| ||||||| |||||||||| ||||||||||||   | | | |||||||||| ||||||||||    
T  21923668 tcaagtcggtatatgaaagaggtggattgtttgcaaaa-atgggtgaatcagattgtaccttcggcgtaaagctgagtcacgcttatatagt 21923758  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 5678075 - 5678005
Alignment:
Q  41 gtggattgtgtgcaaaata-tgggtgaatgagattgtaccttgatcatgatgctgagtcacacttatatag 110  Q
    ||||||||||||||||| | | ||||||||||||||||||||||   ||| ||||||||||  ||||||||    
T  5678075 gtggattgtgtgcaaaaaaattggtgaatgagattgtaccttgactgtgacgctgagtcacggttatatag 5678005  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 5703127 - 5703057
Alignment:
Q  41 gtggattgtgtgcaaaata-tgggtgaatgagattgtaccttgatcatgatgctgagtcacacttatatag 110  Q
    ||||||||||||||||| | | ||||||||||||||||||||||   ||| ||||||||||  ||||||||    
T  5703127 gtggattgtgtgcaaaaaaattggtgaatgagattgtaccttgactgtgacgctgagtcacggttatatag 5703057  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 420 - 482
Target Start/End: Original strand, 22494812 - 22494873
Alignment:
Q  420 tggaaaattgttgttgacacttaaaataaaggttgaaaaacaccagtaaaatatgtaaatatc 482  Q
    |||||||||||||||||||||||| | || || |||||||||||||||||||| |||||||||    
T  22494812 tggaaaattgttgttgacacttaacagaa-ggctgaaaaacaccagtaaaatacgtaaatatc 22494873  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 482
Target Start/End: Original strand, 9428881 - 9428940
Alignment:
Q  422 gaaaattgttgttgacacttaaaataaaggttgaaaaacaccagtaaaatatgtaaatatc 482  Q
    |||||||||||||||||||| | |||| ||||||||||||||| ||||||| | |||||||    
T  9428881 gaaaattgttgttgacacttcacataa-ggttgaaaaacaccaataaaatacgcaaatatc 9428940  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 30808678 - 30808585
Alignment:
Q  17 cactcaagtctgtatgtgcgagaggtggattgtgtgcaaaatatgggtgaatgagattgtaccttgatcatgatgctgagtcacacttatatag 110  Q
    |||||||||| |||||||  ||||||||||||||||  |||  ||||||||| | | |||| ||||| | |||||||||||||  |||||||||    
T  30808678 cactcaagtcggtatgtgaaagaggtggattgtgtgtgaaaactgggtgaataaaagtgtatcttgagcgtgatgctgagtcatgcttatatag 30808585  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 553
Target Start/End: Complemental strand, 251462 - 251417
Alignment:
Q  508 atgcgtcctttatacaaaaatagaagcatcattttcatatcagttt 553  Q
    |||||||||||||||| ||| | |||||||| ||||||||||||||    
T  251462 atgcgtcctttatacataaacataagcatcagtttcatatcagttt 251417  T

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